bokulich-lab / q2-fondue
Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere
☆21Updated last week
Alternatives and similar repositories for q2-fondue:
Users that are interested in q2-fondue are comparing it to the libraries listed below
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated last year
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- Master of Pores 2☆23Updated last month
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆27Updated this week
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆17Updated last year
- The Zavolab Automated RNA-seq Pipeline☆35Updated 3 weeks ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated this week
- Fast FASTQ sample demultiplexing in Rust.☆58Updated last month
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- Fully automated generation of UCSC assembly hubs☆34Updated 3 months ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆31Updated 6 months ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆30Updated last year
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated last year
- Complex structural variant visualization for HiFi sequencing data☆27Updated 2 months ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- A method of assessing sequence complexity based on kmer frequencies☆30Updated 6 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆32Updated last week
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 5 months ago
- Pipeline which removes human DNA from microbial shotgun samples.☆13Updated 3 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆16Updated 3 months ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆35Updated 7 months ago
- Implementation of Krona to QIIME2☆15Updated 10 months ago
- This is a read-only mirror of the CRAN R package repository. chromoMap — Interactive Genomic Visualization of Biological Data☆9Updated 2 years ago
- Template for building a small workflow in Nextflow☆16Updated 2 years ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆13Updated last month
- vembrane filters VCF records using python expressions☆57Updated 3 months ago
- Evolutionary Transcriptomics with R☆41Updated this week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 3 months ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 7 months ago