Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere
☆24Jun 11, 2026Updated 2 weeks ago
Alternatives and similar repositories for q2-fondue
Users that are interested in q2-fondue are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- QIIME 2 plugin supporting taxonomic classification☆20Jun 9, 2026Updated 2 weeks ago
- PathIntegrate Python package for pathway-based multi-omics data integration☆19Nov 9, 2024Updated last year
- Bayesian Inferential Regression for Differential Microbiome Analysis☆25Jun 5, 2026Updated 3 weeks ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆15Jun 22, 2026Updated last week
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Case-control matching for microbiome data☆10Aug 8, 2023Updated 2 years ago
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆56Aug 4, 2024Updated last year
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- A QIIME 2 implementation of SMURF☆13Apr 27, 2022Updated 4 years ago
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆527Jun 18, 2026Updated last week
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated last year
- MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.☆10Mar 3, 2023Updated 3 years ago
- CodeBuddy: A programming assignment management system for short-form exercises☆19Updated this week
- RNA-binding protein motif analysis☆11Sep 29, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.☆30May 5, 2025Updated last year
- REference Sequence annotation and CuRatIon Pipeline☆101Jun 3, 2026Updated 3 weeks ago
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 8 years ago
- Human pan-genome analysis pipeline☆30Apr 30, 2020Updated 6 years ago
- ☆12Feb 14, 2023Updated 3 years ago
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Jan 31, 2020Updated 6 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- ☆13Sep 24, 2025Updated 9 months ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆87Nov 3, 2025Updated 7 months ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆11Oct 5, 2023Updated 2 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆26Dec 5, 2024Updated last year
- xSqueezeIt VCF/BCF Genotype data compressor with extensible compute friendly format☆14Aug 5, 2025Updated 10 months ago
- Github Action to deploy conda package to Anaconda repository☆11May 28, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆39Nov 19, 2024Updated last year
- ☆17May 22, 2023Updated 3 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆42Apr 30, 2025Updated last year
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- ☆17Apr 9, 2021Updated 5 years ago