Alternatives and similar repositories for scPoli_reproduce:

Users that are interested in scPoli_reproduce are comparing it to the libraries listed below

• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated 5 months ago
• theislab / cross_system_integration
  ☆12Updated last week
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆40Updated last year
• satijalab / Mixscale
  ☆16Updated last month
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 3 weeks ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆39Updated 2 months ago
• KPMP / Cell-State-Atlas-2022
  Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney
  ☆16Updated last year
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆18Updated last month
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 5 months ago
• constantAmateur / cellSignalAnalysis
  Identify major cellular signals in bulk transcriptomes
  ☆11Updated 2 years ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆29Updated last year
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆18Updated last week
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆28Updated 4 months ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆48Updated last month
• Teichlab / sctk
  ☆36Updated 6 months ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆18Updated last year
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆25Updated 7 months ago
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆23Updated 4 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated 3 weeks ago
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆21Updated 3 weeks ago
• cellatlas / cellatlas
  ☆16Updated 8 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• Pinlyu3 / IReNA-v2
  Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data
  ☆12Updated 3 years ago
• limix / CellRegMap
  CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq
  ☆21Updated 7 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆27Updated 4 months ago
• ChanghanGitHub / exFINDER
  Identifying external communication signals using single-cell transcriptomics data
  ☆20Updated 9 months ago
• PoolLab / generecovery
  ☆29Updated last year
• pachterlab / FGP_2024
  ☆10Updated last month
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated last month
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆25Updated 2 months ago