theislab / scPoli_reproduceView external linksLinks
Reproducibility notebooks for scPoli
☆22May 5, 2023Updated 2 years ago
Alternatives and similar repositories for scPoli_reproduce
Users that are interested in scPoli_reproduce are comparing it to the libraries listed below
Sorting:
- ☆12Jun 6, 2024Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- ☆10May 31, 2022Updated 3 years ago
- ☆26Apr 1, 2025Updated 10 months ago
- Feature selection for preserving biological trajectories in single-cell data☆20May 29, 2025Updated 8 months ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆30Jan 27, 2026Updated 3 weeks ago
- single-cell decorrelated module networks☆30Aug 24, 2024Updated last year
- Reference mapping for single-cell genomics☆398Dec 2, 2025Updated 2 months ago
- Tools for the analysis of heterogeneous tissues☆14Aug 24, 2022Updated 3 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 4 years ago
- Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.☆26Nov 18, 2023Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Sep 23, 2025Updated 4 months ago
- sharing interactive single cell gene expression visualizations from Seurat☆11May 18, 2023Updated 2 years ago
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆16Dec 8, 2024Updated last year
- ☆11May 21, 2025Updated 8 months ago
- ☆11Jul 18, 2025Updated 6 months ago
- MuDCoD: Multi-subject Dynamic Community Detection☆12Mar 18, 2025Updated 10 months ago
- ☆13Jan 29, 2021Updated 5 years ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 3 years ago
- Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆14Jul 10, 2024Updated last year
- ☆12Jun 7, 2024Updated last year
- ☆13Mar 29, 2024Updated last year
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated last year
- R for Mass Spectrometry documentation☆14Nov 19, 2025Updated 2 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Aug 8, 2023Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- ☆12Sep 27, 2023Updated 2 years ago
- Conveniently process a dictionary of anndatas☆22Jan 26, 2026Updated 3 weeks ago
- ☆13Sep 30, 2024Updated last year
- ☆13Nov 3, 2023Updated 2 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 4 months ago
- ☆12Sep 29, 2023Updated 2 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆59Nov 18, 2022Updated 3 years ago
- ☆12Mar 22, 2023Updated 2 years ago
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- TRUST4 manuscript evaluation☆16Jul 8, 2022Updated 3 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆16Feb 25, 2019Updated 6 years ago
- ☆16Sep 1, 2023Updated 2 years ago