theislab / scPoli_reproduce
Reproducibility notebooks for scPoli
☆14Updated last year
Alternatives and similar repositories for scPoli_reproduce:
Users that are interested in scPoli_reproduce are comparing it to the libraries listed below
- ☆27Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated 2 weeks ago
- Using BCR and expression for sequence embedding☆19Updated this week
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 11 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- Single-Cell Inference of Class Switch Recombination☆18Updated 6 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆30Updated 3 weeks ago
- Identifying external communication signals using single-cell transcriptomics data☆20Updated 8 months ago
- ☆34Updated 4 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated last month
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 2 years ago
- Single-cell Case Control Analysis☆48Updated 3 months ago
- Difference in Intercellular Communication from scRNA-seq data☆21Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 7 months ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆21Updated 6 months ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- ☆10Updated last year
- CAST package☆29Updated 3 months ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 3 months ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆21Updated last year
- ☆39Updated 3 years ago
- ☆11Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 2 months ago
- ☆14Updated last year
- ☆23Updated 4 months ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆15Updated 11 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆70Updated 9 months ago