Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
☆72Sep 30, 2025Updated last year
Alternatives and similar repositories for picasso
Users that are interested in picasso are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆34Aug 24, 2021Updated 5 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆24Feb 14, 2021Updated 5 years ago
- Consistent Clusters for scRNA-seq☆12Oct 6, 2021Updated 5 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 5 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 8 years ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- ☆21May 24, 2025Updated last year
- ☆21Aug 21, 2026Updated 2 months ago
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 3 years ago
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆31May 20, 2025Updated last year
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- ☆14Sep 5, 2026Updated last month
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- The Monod package fits CME models to sequencing data.☆37Updated this week
- R package to process BUS files☆11Mar 18, 2026Updated 7 months ago
- ☆14Jun 20, 2026Updated 4 months ago
- Vignettes to process data and generate figures for the EPI-clone paper☆13May 21, 2025Updated last year
- CellCoal: coalescent simulation of single-cell NGS genotypes☆15Feb 10, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆17Jul 12, 2024Updated 2 years ago
- Single-cell dimensionality reduction evaluation and benchmarking toolkit☆12Sep 4, 2026Updated last month
- Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.☆23Oct 10, 2024Updated 2 years ago
- A command line utilty for working with BINSEQ files☆51Sep 23, 2026Updated last month
- BUS format specification☆13Nov 18, 2019Updated 6 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆40Sep 2, 2026Updated last month
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆12Jun 17, 2026Updated 4 months ago
- ☆14Apr 20, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆13Oct 15, 2026Updated 2 weeks ago
- ☆45Oct 30, 2024Updated 2 years ago
- home of the bear's lair☆10May 19, 2017Updated 9 years ago
- R package to access DoRothEA's regulons☆163Feb 24, 2024Updated 2 years ago
- A high efficiency binary format for sequencing data☆110Aug 26, 2026Updated 2 months ago
- A tool to find sequencing data and metadata from public databases.☆605Aug 13, 2024Updated 2 years ago
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago