pachterlab / picassoLinks
Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
☆70Updated last year
Alternatives and similar repositories for picasso
Users that are interested in picasso are comparing it to the libraries listed below
Sorting:
- An interface for Nested Stochastic Block Model for single cell analysis☆35Updated last week
- Create PyTorch Datasets from AnnData☆20Updated 4 months ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- ☆33Updated 3 years ago
- Single-cell multi-omics integration using Optimal Transport☆45Updated 10 months ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated 2 years ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆42Updated last week
- Unified knowledge-driven network inference from omics data☆44Updated last week
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Multi-omics studies are available here☆51Updated 3 years ago
- Python client for the OmniPath web service☆45Updated 2 weeks ago
- Quantifying experimental perturbations at single cell resolution☆109Updated 9 months ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Single-cell Hierarchical Poisson Factorization☆70Updated 2 years ago
- ☆44Updated 8 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆49Updated 2 months ago
- Multi-omics factor analysis v2☆46Updated 8 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆25Updated 2 months ago
- Deep exponential families for single-cell data.☆21Updated 8 months ago
- Geometry-preserving random sampling☆87Updated 8 months ago
- Multi-modal single cell analysis pipelines☆59Updated last week
- ☆22Updated 2 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆51Updated 7 years ago
- Code and documentation for the curation of cellxgene datasets☆47Updated last week
- Dorothea package in Python☆11Updated 3 years ago