pachterlab / picassoLinks
Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
☆71Updated 2 months ago
Alternatives and similar repositories for picasso
Users that are interested in picasso are comparing it to the libraries listed below
Sorting:
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 2 months ago
- ☆33Updated 4 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Single-cell multi-omics integration using Optimal Transport☆48Updated 4 months ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Updated 2 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 3 months ago
- Create PyTorch Datasets from AnnData☆21Updated 9 months ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- ☆20Updated 4 years ago
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- scRNAseq integration with triplet neural networks☆41Updated 3 years ago
- Spatially aware dimension reduction for spatial transcriptomics.☆62Updated 9 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Deep exponential families for single-cell data.☆20Updated last week
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Multi-omics factor analysis v2☆54Updated 2 months ago
- Multi-modal single cell analysis pipelines☆62Updated 2 weeks ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated 2 years ago
- Finding the causality in biological pathways☆13Updated 2 years ago
- Dorothea package in Python☆11Updated 3 years ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- ☆29Updated 6 months ago
- Computational Biology- Spring 2021☆48Updated 4 years ago
- ☆22Updated 3 years ago
- ☆31Updated 4 years ago