noush-joglekar / scisorseqrLinks
scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions
☆38Updated 2 years ago
Alternatives and similar repositories for scisorseqr
Users that are interested in scisorseqr are comparing it to the libraries listed below
Sorting:
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆50Updated 11 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆52Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 months ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆22Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- binned motif enrichment analysis and visualisation☆40Updated 2 weeks ago
- RNA editing tests☆17Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆60Updated 3 weeks ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 4 months ago
- SNV calling from single cell sequencing☆104Updated 8 months ago
- ☆32Updated 6 months ago
- ☆47Updated 6 months ago
- ☆86Updated 4 years ago
- ☆77Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 8 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 8 months ago
- Tutorial Website☆59Updated 4 years ago
- ☆23Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Code for the identification step for CSI-Microbes☆30Updated 8 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Tools which deal with multiple single cell measurements☆23Updated last month
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆77Updated last year