scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions
☆45Mar 9, 2023Updated 3 years ago
Alternatives and similar repositories for scisorseqr
Users that are interested in scisorseqr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner☆23May 1, 2024Updated 2 years ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆25Sep 3, 2026Updated 2 weeks ago
- Isoform co-usage networks from single-cell RNA-seq data☆19Feb 21, 2024Updated 2 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆25Feb 28, 2023Updated 3 years ago
- Single-cell Iso Prep☆17Oct 28, 2023Updated 2 years ago
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆28Oct 6, 2023Updated 2 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- A universal toolkit for upstream processing of long RNA reads☆239Updated this week
- ☆23Jul 15, 2026Updated 2 months ago
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 4 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆71May 30, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆69Updated this week
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆16Mar 1, 2022Updated 4 years ago
- Data and additional information from the initial MAS-ISO-seq study, "High-throughput RNA isoform sequencing using programmable cDNA conca…☆12Feb 24, 2023Updated 3 years ago
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 5 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆80Mar 21, 2023Updated 3 years ago
- This repository contains the source code for the tappAS application. See README for details.☆22Jun 23, 2026Updated 2 months ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- ☆13Feb 16, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 3 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- ☆12Sep 8, 2021Updated 5 years ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆281Updated this week
- ☆27May 8, 2022Updated 4 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆40Nov 8, 2023Updated 2 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 4 years ago
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data☆10Jul 20, 2022Updated 4 years ago
- Simple template for running snakemake with R☆12Jan 31, 2023Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆21Jan 16, 2025Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 8 months ago
- ☆19Mar 8, 2023Updated 3 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆33Jan 29, 2026Updated 7 months ago
- ☆16Sep 8, 2024Updated 2 years ago