pachterlab / RMEJLBASBMP_2024Links
Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"
☆20Updated 9 months ago
Alternatives and similar repositories for RMEJLBASBMP_2024
Users that are interested in RMEJLBASBMP_2024 are comparing it to the libraries listed below
Sorting:
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- ☆20Updated 5 months ago
- scover☆24Updated 2 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last month
- interactive plots for differential expression analysis☆34Updated 4 months ago
- Scripts to install as a Bioconda package for making workflows☆17Updated last year
- ☆17Updated last year
- A single cell sequencing read simulator.☆33Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last month
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Updated last year
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆22Updated last year
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆17Updated last month
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- 🐶 hlabud: HLA genotype analysis in R☆17Updated 7 months ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆19Updated last week
- ☆18Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last month
- SCASA: Single cell transcript quantification tool☆22Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Create QC and summary reports for Alevin output☆31Updated 2 weeks ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 10 months ago