pachterlab / RMEJLBASBMP_2024Links
Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"
☆19Updated 5 months ago
Alternatives and similar repositories for RMEJLBASBMP_2024
Users that are interested in RMEJLBASBMP_2024 are comparing it to the libraries listed below
Sorting:
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- scover☆23Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 10 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 8 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆10Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Updated last year
- ☆20Updated last month
- Gene Expression Decomposition and Integration☆18Updated 4 months ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Heterogeneity Induced Pre-Processing tOol☆18Updated 3 years ago
- Code for EpiMap data browser☆14Updated last year
- ☆22Updated last year
- A single cell sequencing read simulator.☆33Updated 9 months ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆17Updated last year
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆16Updated 2 months ago
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- Inference of TCR motifs☆32Updated 3 weeks ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago