pachterlab / RMEJLBASBMP_2024Links
Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"
☆21Updated last week
Alternatives and similar repositories for RMEJLBASBMP_2024
Users that are interested in RMEJLBASBMP_2024 are comparing it to the libraries listed below
Sorting:
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 4 years ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- scover☆24Updated 2 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- A single cell sequencing read simulator.☆33Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- ☆20Updated 6 months ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 10 months ago
- Scripts to install as a Bioconda package for making workflows☆18Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆18Updated last year
- Code for EpiMap data browser☆14Updated last year
- ☆23Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- Tools for assessing clustering robustness☆28Updated 2 months ago
- Gene Expression Decomposition and Integration☆19Updated 9 months ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 2 months ago
- Inference of TCR motifs☆32Updated 5 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated 2 months ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Updated last year
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆19Updated 2 weeks ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Updated last year
- Explore the cancer relevance of your gene list☆52Updated this week
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- 🐶 hlabud: HLA genotype analysis in R☆17Updated 7 months ago