mbourgey / EBI_cancer_workshop_visualizationLinks
EBI cancer workshop course materials
☆22Updated 3 years ago
Alternatives and similar repositories for EBI_cancer_workshop_visualization
Users that are interested in EBI_cancer_workshop_visualization are comparing it to the libraries listed below
Sorting:
- hands-on for NGS/SNParray CNV call trainning☆20Updated 3 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 10 months ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated last month
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- ☆17Updated 6 years ago
- DriverPower☆26Updated 11 months ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Utility functions for FACETS☆39Updated last month
- Filtering of PDX samples for mouse derived reads☆28Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15Updated 10 years ago
- ☆33Updated 3 years ago
- Quantifying copy number signatures from absolute copy number profiles☆26Updated 4 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 months ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 7 months ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- ☆41Updated 7 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- Single Cell Analysis Automated Workflow☆28Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago