Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organized multicellular immune hubs in human colorectal cancer"
☆41Sep 5, 2021Updated 4 years ago
Alternatives and similar repositories for crc-immune-hubs
Users that are interested in crc-immune-hubs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code relating to http://dx.doi.org/10.2139/ssrn.4132721☆11Nov 24, 2022Updated 3 years ago
- ☆10Sep 26, 2019Updated 6 years ago
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 4 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆114Sep 16, 2020Updated 5 years ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆457Apr 11, 2026Updated 3 months ago
- ☆65Feb 21, 2026Updated 5 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆66Mar 31, 2022Updated 4 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- ☆34Jan 26, 2022Updated 4 years ago
- ☆63Dec 27, 2023Updated 2 years ago
- The source code of web server TIP, including example data.☆21Mar 28, 2019Updated 7 years ago
- ☆36Jan 23, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆66Dec 7, 2022Updated 3 years ago
- iterative clustering pipeline of big single cell datasets.☆39Sep 5, 2025Updated 10 months ago
- A repository of case studies using ProjecTILs☆15Jul 26, 2024Updated last year
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated last year
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆93Oct 9, 2024Updated last year
- ☆12Nov 9, 2022Updated 3 years ago
- ☆22Aug 2, 2023Updated 2 years ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- ☆12Mar 5, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆15Feb 23, 2026Updated 4 months ago
- ☆15Mar 2, 2023Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated 2 weeks ago
- This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…☆12Feb 7, 2023Updated 3 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 3 years ago
- Tools used in Human Cell Landscape(HCL)☆56Jul 30, 2020Updated 5 years ago
- ☆42Oct 12, 2018Updated 7 years ago
- Spatial transcriptomics of heart tissue☆28Jun 16, 2022Updated 4 years ago
- ☆59Feb 23, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Spatial Transcriptomic Analysis of OSCC samples☆28Dec 24, 2025Updated 6 months ago
- ☆33Feb 26, 2025Updated last year
- ☆13Jun 18, 2018Updated 8 years ago
- ☆90Jun 24, 2023Updated 3 years ago
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆155Jan 6, 2021Updated 5 years ago
- ☆17Jul 8, 2024Updated 2 years ago
- R package for visualization of highly multiplexed imaging data☆36Jun 9, 2026Updated last month