satijalab / Integration2019Links
☆16Updated 6 years ago
Alternatives and similar repositories for Integration2019
Users that are interested in Integration2019 are comparing it to the libraries listed below
Sorting:
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- ☆32Updated 6 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- ☆13Updated 11 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 3 months ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated last year
- Single-cell Case Control Analysis☆48Updated 7 months ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆17Updated 5 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- ☆28Updated 6 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- R code for single-cell analysis of intestinal epithelial cells☆22Updated 7 years ago
- ☆18Updated last year
- ☆34Updated 6 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆34Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39Updated 5 years ago