sandberg-lab / dataprivacyView external linksLinks
☆16Apr 29, 2024Updated last year
Alternatives and similar repositories for dataprivacy
Users that are interested in dataprivacy are comparing it to the libraries listed below
Sorting:
- ☆16May 23, 2022Updated 3 years ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated last year
- deduplicate FASTA and FASTQ files☆22Feb 16, 2022Updated 3 years ago
- Comprehensive resistance detection from WGS data☆19Feb 1, 2026Updated last week
- Mapping-free variant caller for short-read Illumina data☆20Apr 2, 2020Updated 5 years ago
- ☆22Sep 17, 2025Updated 4 months ago
- Code Safety Inspection Service☆20Sep 23, 2022Updated 3 years ago
- ScaleBio Single-cell RNA Nextflow Workflow☆40Jul 2, 2025Updated 7 months ago
- Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization☆15Sep 18, 2025Updated 4 months ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 3 months ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆27Aug 26, 2024Updated last year
- Tools for doing x way meta-analysis☆12Apr 12, 2022Updated 3 years ago
- The order monitoring system for our Cafes.☆12Apr 1, 2021Updated 4 years ago
- An R package designed to demultiplex cell hashing data☆31Jan 11, 2026Updated last month
- An R package to analyze single-cell V(D)J data☆28Nov 13, 2023Updated 2 years ago
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 2 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Jan 28, 2026Updated 2 weeks ago
- Benchmarking FASTQ compression with 'mature' compression algorithms☆43Sep 19, 2024Updated last year
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 4 years ago
- A protocol to estimate global ancestry starting from raw Illumina data☆11Oct 16, 2019Updated 6 years ago
- Explore the Hi-Cs☆11Nov 30, 2025Updated 2 months ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Oct 11, 2023Updated 2 years ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆12Feb 6, 2026Updated last week
- Snakemake pipeline for the preprocessing, alignment, QC, and quantification of spatial transcriptomics data - both short-read and long-re…☆11Nov 16, 2025Updated 2 months ago
- Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" b…☆14Oct 20, 2023Updated 2 years ago
- Utility functions to extend and optimize GenomicRanges functionality.☆10Mar 6, 2025Updated 11 months ago
- Map between IETF language tags and OpenType language system tags☆12Aug 20, 2020Updated 5 years ago
- official build specifications for jupyter☆13Jun 3, 2021Updated 4 years ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- An agile visualization dashboard for R☆19Oct 8, 2021Updated 4 years ago
- file command's magic pattern file for bioinformatics☆21Nov 25, 2015Updated 10 years ago
- Proportional Odds Logistic Mixed Model (POLMM) for ordinal categorical data analysis☆11Aug 26, 2022Updated 3 years ago
- Visualization methods for omics dataset quality control☆10Jul 17, 2025Updated 6 months ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated 2 weeks ago
- ☆12Aug 29, 2024Updated last year
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Bioinformatics scripts☆14Dec 23, 2024Updated last year
- Antimicrobial Resistance Analysis☆10Jun 11, 2024Updated last year