QiuyuLian / CITE-sort
☆15Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for CITE-sort
- cTPnet Package☆23Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- ☆34Updated 6 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Updated 2 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆43Updated 7 months ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆25Updated 5 years ago
- scLearn:Learning for single cell assignment☆34Updated last year
- Experimental design framework for scRNAseq population studies (eQTL and DE)☆45Updated 7 months ago
- ☆39Updated 3 years ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆27Updated 4 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆49Updated 6 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- SCDC☆42Updated last year
- Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data☆29Updated 9 months ago
- Single-cell Case Control Analysis☆47Updated 2 weeks ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆63Updated 6 months ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆73Updated 11 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆32Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- ☆47Updated 3 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago