HMS-IDAC / UnMicstLinks
UNet script, model, sample data
☆13Updated 8 months ago
Alternatives and similar repositories for UnMicst
Users that are interested in UnMicst are comparing it to the libraries listed below
Sorting:
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 5 months ago
- QuPath extension to interactively align images☆25Updated 2 months ago
- Integrated pipeline for multiplexed image analysis☆97Updated 6 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- End-to-end model for cell segmentation and classification☆21Updated 9 months ago
- Piecewise alignment for layers of mosaics☆29Updated last month
- ☆34Updated last year
- The official QuPath extension for InstanSeg☆26Updated this week
- Interactive visualization of spatial omics data☆70Updated last week
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆60Updated last year
- Multiple-choice microscopy pipeline☆135Updated 3 weeks ago
- ☆27Updated this week
- comseg☆24Updated 8 months ago
- Framework for image and flow cytometry analysis☆30Updated 2 weeks ago
- QuPath extension to run StarDist nucleus detection☆47Updated 3 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆25Updated 6 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆41Updated last week
- multimodal whole slide image registration in a graph structure☆95Updated last year
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆11Updated 2 years ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆93Updated last month
- A pipeline to transform images into valuable analysis items☆15Updated 4 months ago
- rna2seg☆17Updated 5 months ago
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…☆19Updated last year
- Histology Topography Cytometry Analysis Toolbox☆67Updated last week
- Accessible and interoperable whole slide image analysis☆146Updated last week
- ☆23Updated 2 years ago
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Updated 6 months ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year