HMS-IDAC / UnMicstLinks
UNet script, model, sample data
☆13Updated 7 months ago
Alternatives and similar repositories for UnMicst
Users that are interested in UnMicst are comparing it to the libraries listed below
Sorting:
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Integrated pipeline for multiplexed image analysis☆97Updated 6 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆62Updated 4 months ago
- QuPath extension to run StarDist nucleus detection☆46Updated 3 months ago
- Multiple-choice microscopy pipeline☆135Updated this week
- QuPath extension to interactively align images☆25Updated last month
- The official QuPath extension for InstanSeg☆25Updated last month
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆59Updated last year
- ☆26Updated 3 weeks ago
- Interactive visualization of spatial omics data☆67Updated last week
- ☆34Updated last year
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- multimodal whole slide image registration in a graph structure☆94Updated last year
- Accessible and interoperable whole slide image analysis☆137Updated last week
- Piecewise alignment for layers of mosaics☆29Updated last month
- comseg☆24Updated 8 months ago
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- ☆27Updated 4 months ago
- version 1 scripts for CODA☆55Updated last year
- End-to-end model for cell segmentation and classification☆20Updated 8 months ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated 2 years ago
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Updated 5 months ago
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆21Updated 4 months ago
- Python API and Jupyter widget for Vitessce☆56Updated last week
- ☆23Updated 2 years ago
- A pipeline to transform images into valuable analysis items☆15Updated 3 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated last year
- ☆72Updated this week
- CODEX data processing code☆12Updated 3 months ago