HMS-IDAC / UnMicstLinks
UNet script, model, sample data
☆13Updated 4 months ago
Alternatives and similar repositories for UnMicst
Users that are interested in UnMicst are comparing it to the libraries listed below
Sorting:
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- Piecewise alignment for layers of mosaics☆25Updated last month
- Transfer trained StarDist models across imaging modalities☆3Updated 9 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆43Updated 11 months ago
- QuPath extension to interactively align images☆23Updated 3 weeks ago
- ☆33Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated last month
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- comseg☆21Updated 4 months ago
- CODEX data processing code☆12Updated last week
- Interactive visualization of spatial omics data☆59Updated 2 weeks ago
- ☆18Updated last year
- multimodal whole slide image registration in a graph structure☆87Updated 11 months ago
- Minimum Information about Tissue Imaging☆20Updated last year
- ☆23Updated 2 years ago
- ☆18Updated last year
- QuPath extension to run StarDist nucleus detection☆40Updated this week
- End-to-end model for cell segmentation and classification☆16Updated 5 months ago
- The official QuPath extension for InstanSeg☆19Updated last week
- rna2seg☆14Updated last month
- Python package for reading imaging mass cytometry (IMC) files☆15Updated 2 weeks ago
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Updated 2 months ago
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆20Updated last month
- A pipeline to transform images into valuable analysis items☆13Updated last week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Python API and Jupyter widget for Vitessce☆47Updated this week
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- Integrated pipeline for multiplexed image analysis☆90Updated 2 months ago
- QuPath extension for Cellsparse☆18Updated last month
- version 1 scripts for CODA☆48Updated last year