ucl-respiratory / preinvasiveView external linksLinks
Molecular analysis of pre-invasive lung cancer samples
☆14Jan 18, 2019Updated 7 years ago
Alternatives and similar repositories for preinvasive
Users that are interested in preinvasive are comparing it to the libraries listed below
Sorting:
- ☆12Apr 26, 2020Updated 5 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 4 years ago
- ☆13Sep 24, 2025Updated 4 months ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- ☆12Dec 16, 2021Updated 4 years ago
- Utility functions for FACETS☆39Oct 24, 2025Updated 3 months ago
- An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The…☆15Jan 29, 2026Updated 2 weeks ago
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆23Jan 23, 2026Updated 3 weeks ago
- Code and analyses from "FDR: A New Deal" paper☆15Apr 18, 2017Updated 8 years ago
- ☆17Jan 9, 2023Updated 3 years ago
- How to brand and automate your work with Rmarkdown☆22Feb 3, 2018Updated 8 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆26May 12, 2020Updated 5 years ago
- ☆19Sep 18, 2019Updated 6 years ago
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆22May 25, 2020Updated 5 years ago
- ☆28Jan 25, 2022Updated 4 years ago
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Mar 10, 2021Updated 4 years ago
- material related to the genetech courses☆10Sep 11, 2023Updated 2 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- Battenberg algorithm and associated implementation script☆53Oct 21, 2020Updated 5 years ago
- Spatial Transcriptomic Analysis of OSCC samples☆28Dec 24, 2025Updated last month
- DriverPower☆26Jan 18, 2025Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Jun 7, 2019Updated 6 years ago
- ☆33Jul 17, 2021Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72May 23, 2024Updated last year
- ☆75Jul 12, 2023Updated 2 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Jan 28, 2022Updated 4 years ago
- Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…☆38Aug 2, 2021Updated 4 years ago
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39May 15, 2020Updated 5 years ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆39Nov 25, 2023Updated 2 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆46Feb 7, 2018Updated 8 years ago
- detecting spatial patterns of allele-specific expression☆11May 22, 2024Updated last year
- ☆10Jan 19, 2019Updated 7 years ago
- ☆10May 25, 2025Updated 8 months ago
- Framework for Metastatic And Clonal History INtegrative Analysis☆36Mar 5, 2021Updated 4 years ago
- set of functions for genomics data analysis☆10Apr 22, 2022Updated 3 years ago
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 7 years ago