Molecular analysis of pre-invasive lung cancer samples
☆14Jan 18, 2019Updated 7 years ago
Alternatives and similar repositories for preinvasive
Users that are interested in preinvasive are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- ☆13Sep 24, 2025Updated 10 months ago
- ☆12Apr 26, 2020Updated 6 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆14Nov 12, 2019Updated 6 years ago
- ☆17Mar 10, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- Utility functions for FACETS☆40Oct 24, 2025Updated 9 months ago
- ☆13Dec 16, 2021Updated 4 years ago
- An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The…☆15Jan 29, 2026Updated 5 months ago
- ☆17Jan 9, 2023Updated 3 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆57Mar 10, 2021Updated 5 years ago
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 7 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆19Sep 18, 2019Updated 6 years ago
- Code and analyses from "FDR: A New Deal" paper☆15Apr 18, 2017Updated 9 years ago
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆23May 25, 2020Updated 6 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Jan 28, 2022Updated 4 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- ☆23Jul 15, 2026Updated last week
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆27May 12, 2020Updated 6 years ago
- ☆28Jan 25, 2022Updated 4 years ago
- How to brand and automate your work with Rmarkdown☆22Feb 3, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆73May 23, 2024Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆61Jun 7, 2019Updated 7 years ago
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆27Updated this week
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- Battenberg algorithm and associated implementation script☆55Oct 21, 2020Updated 5 years ago
- Framework for Metastatic And Clonal History INtegrative Analysis☆37Mar 5, 2021Updated 5 years ago
- Spatial Transcriptomic Analysis of OSCC samples☆28Dec 24, 2025Updated 7 months ago
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- ☆12Mar 5, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Stochastic simulation of next-generation sequencing data from neutrally evolving tumors☆10Nov 9, 2016Updated 9 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆42Jun 2, 2026Updated last month
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 6 years ago
- ☆80Jul 12, 2023Updated 3 years ago
- material related to the genetech courses☆10Sep 11, 2023Updated 2 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 7 years ago
- Coupled clustering of single cell genomic data☆14Sep 21, 2021Updated 4 years ago