mozack / vdjer
V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data
☆28Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for vdjer
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Differential ATAC-seq toolkit☆27Updated 10 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆27Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated last week
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 2 months ago
- Chromatin segmentation in R☆19Updated 6 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Useful tools for working with Salmon output☆35Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 2 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆39Updated 3 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Bead-based single-cell atac processing☆31Updated 2 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- Integrated copy number variation detection toolset☆25Updated 4 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆27Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 6 months ago
- iread☆23Updated 3 years ago