shendurelab / mouse-atacLinks
Repo for website and other code for mouse sci-ATAC-seq project
☆28Updated 4 years ago
Alternatives and similar repositories for mouse-atac
Users that are interested in mouse-atac are comparing it to the libraries listed below
Sorting:
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- ☆17Updated 6 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆48Updated 5 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis☆20Updated 5 years ago
- ☆20Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- R code for single-cell analysis of intestinal epithelial cells☆22Updated 7 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- ☆23Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- ☆34Updated 6 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆47Updated 7 months ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Single-cell Case Control Analysis☆52Updated 9 months ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- ☆33Updated 6 years ago
- ☆30Updated 7 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year