Alternatives and similar repositories for SHARP

Users that are interested in SHARP are comparing it to the libraries listed below

• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆43Updated last year
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated last year
• KChen-lab / SCMarker
  Marker gene selection from scRNA-seq data
  ☆15Updated 5 years ago
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 4 years ago
• pachterlab / NYMP_2018
  ☆28Updated 6 years ago
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆39Updated 4 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 5 years ago
• skinnider / SCT-MoA
  Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"
  ☆16Updated 6 years ago
• WeiqiangZhou / BIRD
  Big data Regression for predicting DNase I hypersensitivity
  ☆31Updated last year
• mhu10 / scPanoView
  ☆11Updated 6 years ago
• yycunc / SAFEclustering
  SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data
  ☆18Updated 4 years ago
• dgrun / RaceID
  Algorithm for the inference of cell types from single-cell RNA-seq data.
  ☆46Updated 9 years ago
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 3 years ago
• yanailab / enhance
  ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
  ☆14Updated 6 years ago
• limix / CellRegMap
  CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq
  ☆23Updated last year
• mohuangx / SAVER-paper
  Scripts for data and figure generation in SAVER paper
  ☆17Updated 5 years ago
• csjansen / SOMatic
  SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.
  ☆14Updated last year
• xu-lab / SINCERA
  An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis
  ☆28Updated 4 years ago
• debsin / dropClust
  Version 2.1.0 released
  ☆23Updated 6 years ago
• lcmmichielsen / scHPL
  ☆37Updated 10 months ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 4 years ago
• loosolab / cardiac-progenitors
  Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement
  ☆10Updated 5 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• SUwonglab / scABC
  ☆21Updated 6 years ago
• simslab / cluster_diffex2018
  scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers
  ☆22Updated 4 years ago
• IlyaLab / gssnng
  Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.
  ☆12Updated last year
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 3 years ago
• sdomanskyi / DigitalCellSorter
  Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
  ☆24Updated 4 years ago
• ambrosejcarr / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆30Updated 6 years ago
• vanheeringen-lab / scepia
  Single Cell Epigenome-based Inference of Activity
  ☆19Updated 2 years ago