SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection
☆18Apr 26, 2021Updated 5 years ago
Alternatives and similar repositories for SHARP
Users that are interested in SHARP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago
- Clustering through Imputation and Dimensionality Reduction☆64Sep 21, 2017Updated 8 years ago
- An algorithm used to classify the cell types from single cell rna sequence data.☆10Jan 24, 2021Updated 5 years ago
- TENET is a tool for reconstructing gene regulatory networks from pseudo-time ordered single-cell transcriptomic data.☆41Mar 18, 2022Updated 4 years ago
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Aug 29, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code to support: "pcaReduce: hierarchical clustering of single cell transcriptional profiles"☆21Feb 24, 2024Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆48May 13, 2016Updated 10 years ago
- SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.☆11Jan 26, 2018Updated 8 years ago
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Jan 11, 2023Updated 3 years ago
- ☆16May 25, 2021Updated 4 years ago
- A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.☆14May 1, 2023Updated 3 years ago
- scGMAI: a Gaussian mixture model for clustering single-cell RNA-seq data based on deep autoencoder☆15Jun 7, 2021Updated 4 years ago
- ☆21Jul 3, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- scDCC: Single Cell Deep Constrained Clustering☆45Jul 10, 2024Updated last year
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Aug 29, 2024Updated last year
- ☆42Sep 14, 2022Updated 3 years ago
- ☆15Feb 5, 2024Updated 2 years ago
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- Differential methylation: Easy, Fast, Identification and ANnoTation☆19Dec 18, 2020Updated 5 years ago
- ☆15Jun 17, 2021Updated 4 years ago
- 바닥부터 시작하는 R + 바이오인포☆12Nov 28, 2016Updated 9 years ago
- ☆12Jul 13, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis☆29Jan 27, 2021Updated 5 years ago
- Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data☆20Jan 26, 2026Updated 3 months ago
- An R package to construct Elastic Principal Graphs☆24Nov 29, 2019Updated 6 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆36Jun 18, 2018Updated 7 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆129Jun 28, 2021Updated 4 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆20Feb 9, 2022Updated 4 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆87May 11, 2022Updated 4 years ago
- The Genome Analysis Tutorial Page.☆13Oct 5, 2019Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆49Sep 1, 2023Updated 2 years ago
- Geared simulations: Easy computations over posterior simulations☆12Sep 28, 2015Updated 10 years ago
- cyclone☆19Jul 21, 2015Updated 10 years ago
- Fast graph classifier with optical random features☆12Mar 2, 2021Updated 5 years ago
- ☆19May 5, 2021Updated 5 years ago