Alternatives and similar repositories for APEC:

Users that are interested in APEC are comparing it to the libraries listed below

• nghiavtr / SCmut
  ☆31Updated 5 years ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆23Updated last year
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆31Updated 3 years ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆40Updated 8 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆58Updated 2 years ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• caleblareau / mtscATACpaper_reproducibility
  Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020
  ☆16Updated last year
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• dbrg77 / plate_scATAC-seq
  A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
  ☆43Updated 4 years ago
• liulab-dfci / lisa2
  ☆30Updated 2 years ago
• JiaqiLiZju / CelltypeEvolution
  Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases
  ☆18Updated 4 years ago
• HYsxe / PRINT
  ☆36Updated 6 months ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆21Updated 10 months ago
• petervangalen / MAESTER-2021
  Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).
  ☆12Updated 10 months ago
• haniffalab / FCA_liver
  All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).
  ☆38Updated 4 years ago
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆46Updated last month
• wzthu / esATAC
  Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
  ☆23Updated 2 years ago
• WRui / Post_Implantation
  ☆27Updated 3 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆60Updated 5 months ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆25Updated 5 months ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• morris-lab / BiddyetalWorkflow
  This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
  ☆31Updated 8 months ago
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆75Updated last year
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆48Updated last year
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆92Updated 4 years ago
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆18Updated 8 months ago
• TiedemannLab / sciCNV
  Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution
  ☆12Updated 3 years ago
• gxiaolab / scAllele
  ☆33Updated 10 months ago