Single cell epigenomic clustering based on accessibility pattern
☆23Nov 9, 2022Updated 3 years ago
Alternatives and similar repositories for APEC
Users that are interested in APEC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis pipeline for ATAC-seq Data☆64Sep 2, 2021Updated 4 years ago
- Coupled clustering of single cell genomic data☆14Sep 21, 2021Updated 4 years ago
- scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data☆11Jul 25, 2022Updated 3 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆30Oct 1, 2020Updated 5 years ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Jun 11, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- Analysing Capture Seq Count Data☆13Jun 11, 2018Updated 8 years ago
- Code relevant to sci-ATAC-seq of Drosophila embryogenesis.☆22Jun 9, 2019Updated 7 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆13Feb 27, 2020Updated 6 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆147Apr 5, 2024Updated 2 years ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Aug 29, 2024Updated last year
- ☆19Mar 8, 2023Updated 3 years ago
- ☆12Nov 24, 2022Updated 3 years ago
- Advanced steps of the OSCA book☆14Apr 27, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆23Jul 28, 2025Updated 11 months ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆104Aug 23, 2023Updated 2 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- ☆21Dec 23, 2024Updated last year
- ☆11Sep 17, 2020Updated 5 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆53Jun 17, 2025Updated last year
- ☆13Jun 18, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- CELLEX (CELL-type EXpression-specificity)☆45Apr 29, 2026Updated 2 months ago
- ☆11Oct 25, 2022Updated 3 years ago
- A GWAS fine-mapping pipeline used in CAUSALdb☆27May 1, 2022Updated 4 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Nov 3, 2022Updated 3 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆96Apr 29, 2020Updated 6 years ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 3 years ago
- The analysis pipeline for FLEP-seq☆17Aug 18, 2023Updated 2 years ago
- Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced cou…☆20Sep 29, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- A Bayesian model for compositional single-cell data analysis☆199Jan 13, 2026Updated 6 months ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Nov 10, 2021Updated 4 years ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 5 years ago
- call copy number from WES(WXS)☆11May 10, 2021Updated 5 years ago
- Git使用手册☆18Mar 10, 2019Updated 7 years ago
- Parameter estimation for PDEs☆10Sep 12, 2019Updated 6 years ago