Sun-lab / ideasLinks
Individual level Differential Expression Analysis for Single cells
☆24Updated 2 years ago
Alternatives and similar repositories for ideas
Users that are interested in ideas are comparing it to the libraries listed below
Sorting:
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 2 months ago
- ☆29Updated 2 years ago
- ☆47Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated 3 weeks ago
- .h5mu files interface for Seurat☆32Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated 11 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆50Updated last year
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- ☆40Updated last week
- scWGCNA☆61Updated 2 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Automated cell filtering for single-cell RNA sequencing data☆25Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 3 years ago
- ☆44Updated 9 months ago
- ☆39Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 2 months ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- ☆41Updated 4 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆34Updated 3 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year