Sun-lab / ideas
Individual level Differential Expression Analysis for Single cells
☆23Updated 2 years ago
Alternatives and similar repositories for ideas:
Users that are interested in ideas are comparing it to the libraries listed below
- ☆29Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- ☆30Updated last month
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated 11 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 4 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- scWGCNA☆56Updated 2 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- ☆45Updated 7 months ago
- ☆37Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- ☆35Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆47Updated 4 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated last week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆38Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- R package for specialised analysis of single cell data☆37Updated 2 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆29Updated last month
- Standalone shiny server container for viewing CellChat object☆12Updated 4 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated last week
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- cell type specific, trait-associated gene regulation☆20Updated this week
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago