Sun-lab / ideasLinks
Individual level Differential Expression Analysis for Single cells
☆25Updated 2 years ago
Alternatives and similar repositories for ideas
Users that are interested in ideas are comparing it to the libraries listed below
Sorting:
- ☆29Updated 2 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- ☆48Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 3 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data (based on ParTI)☆33Updated 5 years ago
- ☆40Updated last month
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 5 months ago
- .h5mu files interface for Seurat☆32Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 6 months ago
- R package for specialised analysis of single cell data☆39Updated 2 years ago
- ☆44Updated 10 months ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated last week
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month
- Information-based dimensionality reduction☆29Updated 9 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- Code related to scRNA analysis using the scAmpi workflow☆27Updated 3 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆50Updated 10 months ago
- iterative clustering pipeline of big single cell datasets.☆33Updated last week
- Landscape Single Cell Entropy☆20Updated 5 years ago
- Single-cell Case Control Analysis☆52Updated 2 weeks ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last week
- ☆32Updated 7 months ago