Alternatives and similar repositories for ideas

Users that are interested in ideas are comparing it to the libraries listed below

• PoolLab / generecovery
  ☆29Updated 2 years ago
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆18Updated last year
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆56Updated last year
• UPSUTER / GEMLI
  ☆32Updated 4 months ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆37Updated last year
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆31Updated 3 weeks ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 7 months ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 5 years ago
• MD-Anderson-Bioinformatics / BatchEffectsPackage
  The MBatch R package and Docker image are designed to help assess and correct for batch effects.
  ☆16Updated last year
• phipsonlab / speckle
  R package for analysing single cell data
  ☆55Updated 2 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆40Updated 2 years ago
• neurorestore / DE-analysis
  ☆39Updated 3 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆51Updated this week
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• ChengxiangQiu / JAX_code
  The scripts used for analyzing JAX mouse dataset
  ☆25Updated 7 months ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 5 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆38Updated 2 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆42Updated last year
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆45Updated last year
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆38Updated 3 years ago
• cellatlas / human
  ☆43Updated 7 months ago
• yjzhang / split-seq-pipeline
  ☆21Updated 5 years ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆41Updated 3 weeks ago
• linnarsson-lab / developing-human-brain
  ☆32Updated 9 months ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• jfnavarro / st_analysis
  A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
  ☆18Updated 3 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• Zhen-Miao / PICsnATAC
  Paired Insertion Counting for snATAC-seq data
  ☆17Updated 3 weeks ago
• Teichlab / gene2probe
  Pipeline for designing custom probes against human genes
  ☆16Updated 6 months ago