https://www.sc-best-practices.org
☆1,206Jun 11, 2026Updated this week
Alternatives and similar repositories for single-cell-best-practices
Users that are interested in single-cell-best-practices are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,568Dec 11, 2022Updated 3 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,748Jun 6, 2026Updated last week
- Deep probabilistic analysis of single-cell and spatial omics data☆1,642Updated this week
- A tool for semi-automatic cell type classification☆487May 22, 2026Updated 3 weeks ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,489Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Benchmarking analysis of data integration tools☆423Apr 27, 2026Updated last month
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆1,026Updated this week
- Python package to perform enrichment analysis from omics data.☆270Jun 8, 2026Updated last week
- Single-cell perturbation analysis☆327Updated this week
- This is the alpha version of the CellOracle package☆467Apr 30, 2026Updated last month
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆475Jun 6, 2025Updated last year
- Reference mapping for single-cell genomics☆405Mar 21, 2026Updated 2 months ago
- scRNAseq analysis notes from Ming Tang☆811Dec 2, 2024Updated last year
- CellRank: dynamics from multi-view single-cell data☆454Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A list of scRNA-seq analysis tools☆797May 17, 2026Updated 3 weeks ago
- LIANA+: an all-in-one framework for cell-cell communication☆294May 26, 2026Updated 2 weeks ago
- A package to help convert different single-cell data formats to each other☆469Feb 20, 2026Updated 3 months ago
- Formalizing and benchmarking open problems in single-cell genomics☆433Jun 3, 2026Updated last week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆789Jan 6, 2024Updated 2 years ago
- R toolkit for single cell genomics☆2,749Updated this week
- ☆1,578Apr 29, 2026Updated last month
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆440Jun 2, 2026Updated last week
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆501Apr 23, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- High dimensional weighted gene co-expression network analysis☆478Mar 13, 2026Updated 3 months ago
- Interpretation of cell states using reference single-cell maps☆321Dec 19, 2025Updated 5 months ago
- 单细胞分析的中文pipeline☆295May 21, 2026Updated 3 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆401May 6, 2026Updated last month
- LIANA: a LIgand-receptor ANalysis frAmework☆242Aug 7, 2024Updated last year
- ☆660Mar 13, 2026Updated 3 months ago
- Conversion between scRNA-seq objects☆210May 5, 2026Updated last month
- Fast, sensitive and accurate integration of single-cell data with Harmony☆658Jun 5, 2026Updated last week
- tools and notes for spatial omics☆362Feb 26, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single-cell epigenomics analysis tools☆320May 19, 2026Updated 3 weeks ago
- Papers with code for single cell related papers☆311Mar 23, 2026Updated 2 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆302May 11, 2026Updated last month
- RNA Velocity generalized through dynamical modeling☆504Feb 25, 2026Updated 3 months ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆375Jun 9, 2026Updated last week
- ☆858Apr 20, 2025Updated last year
- Spatiotemporal modeling of spatial transcriptomics☆343Feb 25, 2026Updated 3 months ago