https://www.sc-best-practices.org
☆1,270Aug 29, 2026Updated 3 weeks ago
Alternatives and similar repositories for single-cell-best-practices
Users that are interested in single-cell-best-practices are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,594Dec 11, 2022Updated 3 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,860Sep 7, 2026Updated 2 weeks ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,695Updated this week
- Single-cell analysis in Python. Scales to >100M cells.☆2,565Updated this week
- A tool for semi-automatic cell type classification☆504May 22, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python package to perform enrichment analysis from omics data.☆294Updated this week
- Benchmarking analysis of data integration tools☆432Apr 27, 2026Updated 4 months ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆1,209Updated this week
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆396Updated this week
- This is the alpha version of the CellOracle package☆501Apr 30, 2026Updated 4 months ago
- Single-cell perturbation analysis☆346Updated this week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆487Jun 6, 2025Updated last year
- R toolkit for single cell genomics☆2,802Updated this week
- scRNAseq analysis notes from Ming Tang☆841Dec 2, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- LIANA+: an all-in-one framework for cell-cell communication☆318Sep 17, 2026Updated last week
- Reference mapping for single-cell genomics☆411Jun 26, 2026Updated 2 months ago
- CellRank: dynamics from multi-view single-cell data☆456Sep 16, 2026Updated last week
- A list of scRNA-seq analysis tools☆817Jul 29, 2026Updated last month
- Formalizing and benchmarking open problems in single-cell genomics☆438Aug 18, 2026Updated last month
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 7 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆793Jan 6, 2024Updated 2 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆510Jul 26, 2026Updated last month
- ☆1,636Apr 29, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Interpretation of cell states using reference single-cell maps☆326Dec 19, 2025Updated 9 months ago
- High dimensional weighted gene co-expression network analysis☆494Jun 16, 2026Updated 3 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆461Aug 31, 2026Updated 3 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆423Sep 12, 2026Updated last week
- 单细胞分析的中文pipeline☆308May 21, 2026Updated 4 months ago
- An open and interoperable data framework for spatial omics data☆394Updated this week
- ☆672Aug 20, 2026Updated last month
- Single-cell epigenomics analysis tools☆323Sep 12, 2026Updated last week
- Fast, sensitive and accurate integration of single-cell data with Harmony☆672Jun 5, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Papers with code for single cell related papers☆316Mar 23, 2026Updated 6 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆250Aug 7, 2024Updated 2 years ago
- tools and notes for spatial omics☆368Feb 26, 2025Updated last year
- Conversion between scRNA-seq objects☆210May 5, 2026Updated 4 months ago
- RNA Velocity generalized through dynamical modeling☆512Feb 25, 2026Updated 6 months ago
- ☆863Apr 20, 2025Updated last year
- Spatiotemporal modeling of spatial transcriptomics☆344Feb 25, 2026Updated 6 months ago