pachterlab / fastQpickLinks
☆27Updated 6 months ago
Alternatives and similar repositories for fastQpick
Users that are interested in fastQpick are comparing it to the libraries listed below
Sorting:
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 3 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆34Updated last week
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated last month
- ☆80Updated this week
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆44Updated last month
- visual analysis of your VCF files☆36Updated 2 years ago
- Merging paired-end reads and removing adapters☆45Updated 4 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 5 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 11 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆53Updated 5 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 3 months ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- Master of Pores 2☆23Updated 8 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- An efficient CLI to extract sequences from the SRA☆111Updated last week
- Version II of Mandalorion☆32Updated 6 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 weeks ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆17Updated 3 months ago
- ☆23Updated 7 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- PERF is an Exhaustive Repeat Finder☆34Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆62Updated 9 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- Evolutionary Transcriptomics with R☆45Updated this week
- ☆25Updated last month
- A script to make downloading of SRA/GEO data easier☆31Updated last year