pachterlab / fastQpick
☆25Updated 2 months ago
Alternatives and similar repositories for fastQpick:
Users that are interested in fastQpick are comparing it to the libraries listed below
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆34Updated last week
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated 3 months ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 2 weeks ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- Fast FASTQ sample demultiplexing in Rust.☆62Updated 2 weeks ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆28Updated last week
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 7 months ago
- A Python library to visualize and analyze long-read transcriptomes☆61Updated last year
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆51Updated 2 months ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated 10 months ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated last year
- interactive plots for differential expression analysis☆32Updated last month
- ☆22Updated 4 months ago
- A script to make downloading of SRA/GEO data easier☆30Updated last year
- SingleCell Nanopore sequencing data analysis☆57Updated 4 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 6 months ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated last week
- fastest GTF/GFF-to-BED converter chilling around☆25Updated 3 months ago
- Version II of Mandalorion☆32Updated 6 years ago
- ☆25Updated last year
- visual analysis of your VCF files☆32Updated 2 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated this week
- Fast sequencing data quality metrics☆26Updated 2 weeks ago
- Master of Pores 2☆23Updated 4 months ago
- Automated Detection and Qualification of Differential Methylation☆13Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Annotation and segmentation of MAS-seq data☆20Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 6 months ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago