pachterlab / fastQpickLinks
☆27Updated 10 months ago
Alternatives and similar repositories for fastQpick
Users that are interested in fastQpick are comparing it to the libraries listed below
Sorting:
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 weeks ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆58Updated 10 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated 3 weeks ago
- Automated Detection and Qualification of Differential Methylation☆16Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- ☆84Updated 3 months ago
- Merging paired-end reads and removing adapters☆46Updated last month
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 10 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆52Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆66Updated 3 weeks ago
- visual analysis of your VCF files☆38Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- Immuological gene typing and annotation for genome assembly☆38Updated 9 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- The Zavolab Automated RNA-seq Pipeline☆36Updated 5 months ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆31Updated 3 weeks ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- fastest GTF/GFF-to-BED converter chilling around☆30Updated 2 months ago
- ☆40Updated 5 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆35Updated last month
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated 2 weeks ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- A python package and a set of shell commands to handle GTF files☆50Updated 2 weeks ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated 3 months ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- A script to make downloading of SRA/GEO data easier☆33Updated 2 years ago
- ☆29Updated 6 months ago