☆27Feb 10, 2025Updated last year
Alternatives and similar repositories for fastQpick
Users that are interested in fastQpick are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Aug 30, 2024Updated last year
- expressions on VCFs☆91Mar 17, 2026Updated last week
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆38Dec 30, 2025Updated 2 months ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆91Jan 28, 2026Updated last month
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆22Aug 15, 2025Updated 7 months ago
- DegenPrimer is a tool to check the quality of degenerate primers by simulating PCR☆17May 12, 2022Updated 3 years ago
- blastn2dotplots: multiple dot-plot visualizer☆24Sep 15, 2025Updated 6 months ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆23Oct 21, 2025Updated 5 months ago
- A collection of easy-to-use custom ggplot2-based functions for data exploration and analysis. Each function handles data preprocessing an…☆24Dec 23, 2025Updated 3 months ago
- Find endogenous viral elements in genomes☆21Sep 24, 2025Updated 6 months ago
- quickly filter fastq files by matching sequences to a set of regex patterns☆58Dec 14, 2025Updated 3 months ago
- The Monod package fits CME models to sequencing data.☆33Updated this week
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- Scripts for analyses in the Griffin manuscript☆12Dec 14, 2022Updated 3 years ago
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 6 months ago
- ☆14Oct 17, 2024Updated last year
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 5 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated last year
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆46Dec 8, 2025Updated 3 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Apr 9, 2022Updated 3 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Nov 25, 2024Updated last year
- TIDDIT - structural variant calling☆10Dec 8, 2025Updated 3 months ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 2 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆42Updated this week
- A bioinformatics pipeline to phase and impute genetic data☆29Mar 17, 2026Updated last week
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- structural variant database software☆48Feb 16, 2026Updated last month
- material related to the genetech courses☆10Sep 11, 2023Updated 2 years ago
- A straightforward and complete next-generation sequencing read simulator☆22Feb 18, 2024Updated 2 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 10 months ago
- a minimal, scriptable genome browser for python☆53Dec 20, 2024Updated last year
- Multithreaded read analysis☆24Updated this week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 6 months ago
- v2.x of the microassembly based somatic variant caller☆23Jul 16, 2025Updated 8 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- Repository for the clone2vec python package☆15Updated this week
- ☆12Jan 29, 2025Updated last year