pachterlab / fastQpick
☆25Updated last month
Alternatives and similar repositories for fastQpick:
Users that are interested in fastQpick are comparing it to the libraries listed below
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆25Updated last week
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated 2 months ago
- Master of Pores 2☆23Updated 3 months ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated last week
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆26Updated this week
- ☆21Updated 3 months ago
- Automated Detection and Qualification of Differential Methylation☆12Updated last year
- The Zavolab Automated RNA-seq Pipeline☆35Updated last week
- visual analysis of your VCF files☆32Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- Immuological gene typing and annotation for genome assembly☆35Updated 2 weeks ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆48Updated last month
- A script to make downloading of SRA/GEO data easier☆30Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆60Updated last week
- Evolutionary Transcriptomics with R☆42Updated 3 weeks ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated last month
- Tool package to perform in-silico CRISPR analysis and assessment☆24Updated 10 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 6 months ago
- ☆26Updated 3 weeks ago
- A Python library to visualize and analyze long-read transcriptomes☆59Updated last year
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆65Updated last week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- SingleCell Nanopore sequencing data analysis☆56Updated 3 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last month
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- ☆30Updated 10 months ago