pachterlab / fastQpickLinks
☆27Updated 5 months ago
Alternatives and similar repositories for fastQpick
Users that are interested in fastQpick are comparing it to the libraries listed below
Sorting:
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated last month
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆31Updated last week
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆42Updated last week
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 2 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- ☆79Updated last month
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 4 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆53Updated 4 months ago
- Merging paired-end reads and removing adapters☆44Updated 4 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 months ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated 3 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆69Updated 3 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated last month
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆76Updated this week
- A Python library to visualize and analyze long-read transcriptomes☆62Updated 2 months ago
- Fast FASTQ sample demultiplexing in Rust.☆63Updated last month
- visual analysis of your VCF files☆34Updated 2 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated last year
- Interactive multiscale visualization for structural variation in human genomes☆70Updated 2 weeks ago
- Master of Pores 2☆23Updated 7 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 10 months ago
- gatk4 RNA variant calling pipeline☆50Updated last week
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- An efficient CLI to extract sequences from the SRA☆108Updated 3 weeks ago
- Genomic data interpretation and visualization Workshop☆21Updated last month
- fastest GTF/GFF-to-BED converter chilling around☆25Updated 2 months ago
- ☆25Updated 3 weeks ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆54Updated last month