gtonkinhill / TCGA_analysis

Related projects ⓘ

Alternatives and complementary repositories for TCGA_analysis

• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆36Updated 3 weeks ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated 6 months ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆21Updated last week
• NBISweden / workshop-mlbiostatistics
  ☆15Updated last month
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆32Updated 2 years ago
• 123xiaochen / VCFshiny
  ☆26Updated last month
• EvaYiwenWang / Managing_batch_effects
  ☆13Updated last year
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆25Updated last year
• jtleek / sva-devel
  ☆28Updated 4 months ago
• js2264 / tidyCoverage
  ☆20Updated 2 months ago
• twbattaglia / btools
  A set of R functions that help faciliate a lot of tedious processing
  ☆18Updated 6 years ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆22Updated 10 months ago
• jokergoo / KeywordsEnrichment
  ☆31Updated 10 months ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆24Updated 8 months ago
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆27Updated last year
• hoffmangroup / umap
  ☆25Updated 7 months ago
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆34Updated 7 months ago
• drisso / peixoto2015_tutorial
  Tutorial to reproduce the analysis of Peixoto et al. (2015)
  ☆9Updated 8 years ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆24Updated 7 months ago
• markrobinsonuzh / TreeSummarizedExperiment
  An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
  ☆13Updated 3 years ago
• Kuanhao-Chao / RNASeqR
  📊 An R package of RNA-seq workflow
  ☆15Updated 2 years ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆36Updated this week
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆19Updated 6 years ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆33Updated last year
• JD2112 / methylr
  methylR: a single shiny solution from sequencer data to pathway analysis
  ☆11Updated 3 weeks ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆41Updated this week
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆41Updated 2 years ago
• gavinmdouglas / picrust2_manuscript
  ☆20Updated 4 years ago
• xiaolw95 / NetMoss
  ☆14Updated 2 years ago
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆27Updated last month