☆26Aug 10, 2023Updated 2 years ago
Alternatives and similar repositories for TCGA_analysis
Users that are interested in TCGA_analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Aug 8, 2023Updated 2 years ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated 11 months ago
- PhiSpace for continuous phenotyping single-cell and spatial transcriptomics data☆10Mar 20, 2026Updated last week
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated 11 months ago
- tools and notes for long reads analysis☆24Mar 31, 2025Updated 11 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆14Nov 26, 2023Updated 2 years ago
- FAstqc DAta PArser - A minimal parser to parse FastQC output data.☆16Apr 9, 2016Updated 9 years ago
- A variable-selection oriented LASSO bagging algorithm for biomarker development in omic-based translational research☆19Jul 7, 2023Updated 2 years ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆21Mar 13, 2026Updated last week
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- ☆10Jul 4, 2019Updated 6 years ago
- A library and tool for accessing remote BLOW5 files.☆24Feb 5, 2026Updated last month
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 3 weeks ago
- A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)☆14Apr 9, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 26, 2025Updated 11 months ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- ☆78Oct 16, 2024Updated last year
- Learn about text mining 📄 with tidy data principles☆46Jan 31, 2025Updated last year
- Analyses in R and Python Using curatedMetagenomicData☆35Nov 16, 2025Updated 4 months ago
- Repository for signature genes from Immune Cell Atlas☆19Sep 25, 2019Updated 6 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆11Dec 29, 2025Updated 2 months ago
- Scripts for bioinformatics data processing and analysis☆12Nov 7, 2023Updated 2 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆38Mar 9, 2026Updated 2 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Mar 4, 2026Updated 3 weeks ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆38Dec 30, 2025Updated 2 months ago
- An academic manuscript template with writing tips in both LaTeX and MS Word format generated by the Capra Lab (2/2022)☆22Nov 13, 2023Updated 2 years ago
- Gapless, reference-quality Southern Han Chinese genome assembly and annotation☆12Oct 24, 2022Updated 3 years ago
- ☆11Mar 7, 2026Updated 2 weeks ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- ☆15Feb 7, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- ☆16May 22, 2023Updated 2 years ago
- ☆10Nov 24, 2025Updated 4 months ago
- ☆28Apr 5, 2025Updated 11 months ago
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 3 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆124Updated this week