crazyhottommy / pyflow-RNAseq
RNAseq pipeline based on snakemake
☆25Updated 2 years ago
Alternatives and similar repositories for pyflow-RNAseq:
Users that are interested in pyflow-RNAseq are comparing it to the libraries listed below
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- snakemake workflow for post-processing scATACseq data☆20Updated 4 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 11 months ago
- SingleCell Nanopore sequencing data analysis☆57Updated 3 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated 3 months ago
- ☆21Updated 3 months ago
- A script to make downloading of SRA/GEO data easier☆30Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated 2 weeks ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- ☆23Updated 3 years ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated 11 months ago
- A Python library to visualize and analyze long-read transcriptomes☆60Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Workshop • Analysis of RNA-seq data☆35Updated last year
- workshop website on readthedocs☆19Updated last month
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Differential coexpression analysis☆15Updated last year
- ☆48Updated 4 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆16Updated 3 weeks ago
- A continually expanding collection of RNA-seq tools☆48Updated 6 months ago
- Tutorial Website☆57Updated 4 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆27Updated this week
- Annotation and segmentation of MAS-seq data☆20Updated last year
- ATAC-seq processing pipeline☆32Updated 3 years ago
- Quantitation and visualization of differential alternative splicing events☆10Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆25Updated 2 months ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago