crazyhottommy / pyflow-RNAseqLinks
RNAseq pipeline based on snakemake
☆26Updated 2 years ago
Alternatives and similar repositories for pyflow-RNAseq
Users that are interested in pyflow-RNAseq are comparing it to the libraries listed below
Sorting:
- A Python library to visualize and analyze long-read transcriptomes☆62Updated 3 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- ☆50Updated 4 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆44Updated last month
- SingleCell Nanopore sequencing data analysis☆60Updated 2 months ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- An R interface to the MEME Suite☆52Updated last month
- Ultraperformant reimplementation of SICER☆57Updated 3 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆67Updated 3 weeks ago
- A continually expanding collection of RNA-seq tools☆51Updated 9 months ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated this week
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated 2 weeks ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last week
- Junction Based Analysis of Splicing Events for RNA-Seq☆32Updated 6 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 6 months ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆32Updated 2 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆70Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated 2 months ago
- IDR☆31Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- This RNAseq data analysis tutorial is created for educational purpose☆33Updated this week