RNAseq pipeline based on snakemake
☆27Mar 8, 2023Updated 3 years ago
Alternatives and similar repositories for pyflow-RNAseq
Users that are interested in pyflow-RNAseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- snakemake workflow for post-processing scATACseq data☆23Jul 15, 2020Updated 5 years ago
- Bioinformatics one-liner for 100 days☆49Apr 9, 2024Updated 2 years ago
- R/Bioconductor package for working with 10x scATACseq data☆42Nov 13, 2023Updated 2 years ago
- A DIY guide to gene co-expression network analysis☆15Mar 31, 2025Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14Mar 7, 2024Updated 2 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆12Jun 2, 2026Updated last week
- ATAC-seq snakemake pipeline☆92Feb 13, 2020Updated 6 years ago
- My youtube programming scripts☆60Jan 16, 2025Updated last year
- tools and notes for long reads analysis☆23Mar 31, 2025Updated last year
- ☆24Jan 12, 2026Updated 4 months ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆133Jan 1, 2026Updated 5 months ago
- Calculate DNA methylation age using Horvath 2013 method☆11Aug 25, 2017Updated 8 years ago
- 📺 Discover the latest machine learning / AI courses on YouTube.☆25Nov 26, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DNA sequencing analysis notes from Ming Tang☆148Mar 26, 2023Updated 3 years ago
- Predicted cell-cell interactions of the aging mouse brain☆21Sep 24, 2019Updated 6 years ago
- ☆29May 20, 2023Updated 3 years ago
- autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the an…☆11Apr 17, 2026Updated last month
- ☆91Dec 1, 2024Updated last year
- Python Books☆11Dec 29, 2015Updated 10 years ago
- A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).☆36May 25, 2026Updated 2 weeks ago
- SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data☆11Apr 8, 2026Updated 2 months ago
- ☆15Apr 6, 2016Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆13Mar 28, 2018Updated 8 years ago
- Epigenomic enrichment analysis of age-related genomic regions☆17Jun 4, 2026Updated last week
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Aug 28, 2019Updated 6 years ago
- ☆10May 31, 2022Updated 4 years ago
- ☆15Aug 11, 2025Updated 10 months ago
- Useful bash one-liners for bioinformatics.☆10Jun 26, 2017Updated 8 years ago
- coding exercise using TCGA immune infiltration data☆46Feb 2, 2024Updated 2 years ago
- some resources for startup companies☆65Nov 1, 2023Updated 2 years ago
- Biwhitened PCA☆15Mar 18, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- SlideJ: an ImageJ plugin for WSI processing☆16Nov 7, 2019Updated 6 years ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Sep 22, 2017Updated 8 years ago
- cluster stability measurement by subsampling and reclustering with Seurat V3 and V4☆11Jul 9, 2021Updated 4 years ago
- Examples for gget (https://github.com/pachterlab/gget).☆39Feb 20, 2026Updated 3 months ago
- AmpliCI, a model-based algorithm for denoising Illumina amplicon data.☆25Nov 28, 2025Updated 6 months ago
- Hungarian tokenizer.☆14Mar 15, 2022Updated 4 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 8 years ago