crazyhottommy / pyflow-RNAseqLinks
RNAseq pipeline based on snakemake
☆26Updated 2 years ago
Alternatives and similar repositories for pyflow-RNAseq
Users that are interested in pyflow-RNAseq are comparing it to the libraries listed below
Sorting:
- ☆50Updated 4 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆77Updated 3 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- A Python library to visualize and analyze long-read transcriptomes☆62Updated 2 months ago
- This RNAseq data analysis tutorial is created for educational purpose☆33Updated 2 weeks ago
- A continually expanding collection of RNA-seq tools☆51Updated 9 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆42Updated last week
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated last month
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- Demultiplexes a fastq.☆45Updated 4 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated last month
- Tools for analyzing DNA methylation data☆42Updated last week
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- ☆23Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆38Updated 5 months ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated this week
- ☆69Updated 2 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated last week
- Tip and tricks for BAM files☆85Updated 6 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆64Updated last week
- A list of alternative splicing analysis resources☆44Updated 3 months ago