Fast FASTQ sample demultiplexing in Rust.
☆70Jun 18, 2026Updated 2 weeks ago
Alternatives and similar repositories for fqtk
Users that are interested in fqtk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- an API for intersections of genomic data☆148Mar 12, 2026Updated 3 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Grep for FASTQ files☆104Apr 30, 2026Updated 2 months ago
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Aug 7, 2023Updated 2 years ago
- Quality of life improvements for Bioinformatics in Python.☆33May 21, 2026Updated last month
- A Rust library and command line tool for working with genomic ranges and their data.☆102May 29, 2024Updated 2 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- Per-base per-nucleotide depth analysis☆150May 9, 2026Updated last month
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 2 months ago
- vcfdist: Accurately benchmarking phased variant calls☆87Feb 23, 2026Updated 4 months ago
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated 2 years ago
- bioinformatics toolkit in rust☆107May 14, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆22Jan 3, 2025Updated last year
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated last month
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- expressions on VCFs☆92Mar 17, 2026Updated 3 months ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆141Feb 14, 2025Updated last year
- ☆101Apr 22, 2024Updated 2 years ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 10 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- The Monod package fits CME models to sequencing data.☆35Apr 24, 2026Updated 2 months ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆19Jul 11, 2022Updated 3 years ago
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- Bioinformatics I/O libraries in Rust☆711Jun 24, 2026Updated last week
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Convert vcf in parquet☆32Jan 23, 2025Updated last year
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated last year
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Similarity-Guided Alignment Algorithm☆30Feb 7, 2026Updated 4 months ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- ☆12Apr 18, 2022Updated 4 years ago
- Download FASTQ files from SRA or ENA repositories.☆392May 16, 2026Updated last month
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆186Updated this week
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Apr 16, 2026Updated 2 months ago
- The D4 Quantitative Data Format☆172Nov 28, 2025Updated 7 months ago