fulcrumgenomics / fqtkLinks
Fast FASTQ sample demultiplexing in Rust.
☆62Updated last week
Alternatives and similar repositories for fqtk
Users that are interested in fqtk are comparing it to the libraries listed below
Sorting:
- vembrane filters VCF records using python expressions☆58Updated this week
- An efficient CLI to extract sequences from the SRA☆101Updated this week
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- BigWig and BAM utilities☆96Updated last year
- Fast sequencing data quality metrics☆26Updated this week
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 3 weeks ago
- bedtools-like functionality for interval sets in rust☆52Updated 9 months ago
- an API for intersections of genomic data☆75Updated this week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated this week
- Creating alignment plots from bam files☆65Updated this week
- The Zavolab Automated RNA-seq Pipeline☆35Updated 3 weeks ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- ☆22Updated 2 weeks ago
- A Python library to visualize and analyze long-read transcriptomes☆62Updated last month
- Merging paired-end reads and removing adapters☆44Updated 2 months ago
- gia: Genomic Interval Arithmetic☆62Updated 9 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 years ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- Human reference genome analysis sets☆52Updated last year
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated 4 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last month
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- a lexicographically-based GTF/GFF sorter☆34Updated last month
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆59Updated 3 weeks ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆29Updated 2 weeks ago
- Params validation plugin for Nextflow pipelines☆48Updated 9 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 7 months ago
- Snakemake profile for running jobs on an LSF cluster☆37Updated 10 months ago
- expressions on VCFs☆85Updated last month
- Reference genome resource manager☆76Updated last year