Fast FASTQ sample demultiplexing in Rust.
☆70Jul 30, 2026Updated 2 weeks ago
Alternatives and similar repositories for fqtk
Users that are interested in fqtk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Grep for FASTQ files☆104Jul 9, 2026Updated last month
- an API for intersections of genomic data☆149Mar 12, 2026Updated 5 months ago
- gia: Genomic Interval Arithmetic☆67Aug 21, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Aug 7, 2023Updated 3 years ago
- Quality of life improvements for Bioinformatics in Python.☆35Jul 29, 2026Updated 2 weeks ago
- A Rust library and command line tool for working with genomic ranges and their data.☆102May 29, 2024Updated 2 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- vcfdist: Accurately benchmarking phased variant calls☆89Updated this week
- Per-base per-nucleotide depth analysis☆151May 9, 2026Updated 3 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 3 months ago
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated 2 years ago
- bioinformatics toolkit in rust☆107Jul 16, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last month
- ☆22Aug 3, 2026Updated last week
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 2 months ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- expressions on VCFs☆93Mar 17, 2026Updated 4 months ago
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆142Feb 14, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated last year
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆19Jul 11, 2022Updated 4 years ago
- ☆102Apr 22, 2024Updated 2 years ago
- The Monod package fits CME models to sequencing data.☆36Apr 24, 2026Updated 3 months ago
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- A Similarity-Guided Alignment Algorithm☆31Feb 7, 2026Updated 6 months ago
- Alignment-based filtering CLI tool☆62Oct 31, 2025Updated 9 months ago
- Bioinformatics I/O libraries in Rust☆716Updated this week
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 8 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated last year
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Convert vcf in parquet☆32Jan 23, 2025Updated last year
- Download FASTQ files from SRA or ENA repositories.☆404May 16, 2026Updated 2 months ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- ☆12Apr 18, 2022Updated 4 years ago