Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
☆32Mar 17, 2026Updated 3 weeks ago
Alternatives and similar repositories for pangolin-data
Users that are interested in pangolin-data are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 2 months ago
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- ☆16Oct 29, 2025Updated 5 months ago
- Datasets for https://github.com/nextstrain/nextclade☆45Updated this week
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Nextstrain build for mpox virus☆50Updated this week
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆452Apr 7, 2026Updated last week
- ☆12May 12, 2019Updated 6 years ago
- ☆25Jun 25, 2024Updated last year
- ☆51Mar 11, 2022Updated 4 years ago
- ☆44Feb 13, 2026Updated 2 months ago
- ☆10Apr 16, 2025Updated last year
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Informal summaries of notable SARS-CoV-2 lineages☆111Aug 22, 2025Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Nextstrain build for dengue virus☆14Updated this week
- Ultrafast Sample Placement on Existing Trees☆140Feb 6, 2026Updated 2 months ago
- Repository for suggesting new lineages that should be added to the current scheme☆1,074Mar 30, 2026Updated 2 weeks ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆253Mar 17, 2026Updated 3 weeks ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Dec 9, 2025Updated 4 months ago
- ☆12Feb 15, 2023Updated 3 years ago
- Nextstrain build for avian influenza viruses☆27Apr 1, 2026Updated 2 weeks ago
- RSV-A lineage definitions and proposals☆14Nov 9, 2025Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- Scripts for building the ARTIC lab-on-an-SSD☆11Sep 9, 2020Updated 5 years ago
- ☆12Feb 9, 2025Updated last year
- Coalescent simulation and likelihood for phylodynamic inference☆14May 15, 2025Updated 11 months ago
- ☆21Feb 12, 2026Updated 2 months ago
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 4 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Apr 25, 2025Updated 11 months ago
- Results from a model of global SARS-CoV-2 lineage competition☆39Dec 17, 2025Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for exploring large trees in the browser☆131Mar 31, 2026Updated 2 weeks ago
- Depth-weighted De-Mixing☆131Updated this week
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆53Apr 9, 2026Updated last week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆69Updated this week
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Dec 8, 2025Updated 4 months ago
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Workflow for viral analysis guided by reference☆18Feb 19, 2026Updated last month