Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
☆34Aug 17, 2026Updated 2 weeks ago
Alternatives and similar repositories for pangolin-data
Users that are interested in pangolin-data are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 6 months ago
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- Datasets for https://github.com/nextstrain/nextclade☆47Aug 19, 2026Updated 2 weeks ago
- ☆16Oct 29, 2025Updated 10 months ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Nextstrain build for mpox virus☆50Aug 27, 2026Updated last week
- ☆12May 12, 2019Updated 7 years ago
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆455Aug 17, 2026Updated 2 weeks ago
- ☆10Apr 16, 2025Updated last year
- ☆51Mar 11, 2022Updated 4 years ago
- ☆45Feb 13, 2026Updated 6 months ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Informal summaries of notable SARS-CoV-2 lineages☆111Jun 1, 2026Updated 3 months ago
- ☆25Jun 25, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Jul 7, 2026Updated last month
- RSV-A lineage definitions and proposals☆16Nov 9, 2025Updated 9 months ago
- Ultrafast Sample Placement on Existing Trees☆140Jun 1, 2026Updated 3 months ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆262Aug 19, 2026Updated 2 weeks ago
- Nextstrain build for avian influenza viruses☆29Aug 3, 2026Updated last month
- ☆12Feb 15, 2023Updated 3 years ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 4 years ago
- Nextstrain build for dengue virus☆17Aug 3, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- REcombination BARcode detector.☆17Apr 2, 2024Updated 2 years ago
- Scripts for building the ARTIC lab-on-an-SSD☆11Sep 9, 2020Updated 5 years ago
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- ☆13Jul 20, 2026Updated last month
- Repository for suggesting new lineages that should be added to the current scheme☆1,076Aug 27, 2026Updated last week
- Coalescent simulation and likelihood for phylodynamic inference☆17May 15, 2025Updated last year
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 4 years ago
- Depth-weighted De-Mixing☆134Updated this week
- ARTIC SARS-CoV-2 workflow and reporting☆52Apr 25, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Results from a model of global SARS-CoV-2 lineage competition☆40Dec 17, 2025Updated 8 months ago
- A tool for exploring large trees in the browser☆133Jul 27, 2026Updated last month
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆14Dec 8, 2025Updated 8 months ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆59Updated this week
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago
- Wastewater-Based Epidemiology using Phylogenetic Placements☆19Aug 20, 2026Updated 2 weeks ago
- Workflow for viral analysis guided by reference☆16Aug 13, 2026Updated 3 weeks ago