cov-lineages / pangolin-dataLinks
Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
☆31Updated last month
Alternatives and similar repositories for pangolin-data
Users that are interested in pangolin-data are comparing it to the libraries listed below
Sorting:
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆33Updated last week
- Cluster Investigation & Virus Epidemiology Tool☆50Updated last month
- ☆49Updated 3 years ago
- Depth-weighted De-Mixing☆116Updated this week
- Primer schemes for real-time genome epidemiology☆29Updated 2 years ago
- ☆36Updated 3 months ago
- SC2 variant detection and composition pipeline☆17Updated 2 years ago
- Reconstruction of transmission trees using genomic data☆63Updated last year
- Phylogenetics between and within hosts at once, all along the genome.☆49Updated 9 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 2 months ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆48Updated last year
- Rapid analysis and visualization of coronavirus genome variation☆48Updated this week
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆64Updated 2 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆90Updated last week
- ☆21Updated last year
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- rhierbaps: R implementation of hierBAPS☆35Updated 4 years ago
- ☆49Updated 2 months ago
- all methods related to Enterobase☆42Updated 10 months ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆28Updated last year
- Precise host read removal☆102Updated last month
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 3 months ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 5 months ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Updated this week
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆36Updated this week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- Split Kmer Analysis☆65Updated 3 years ago