cov-lineages / pangolin-dataLinks
Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
☆32Updated last week
Alternatives and similar repositories for pangolin-data
Users that are interested in pangolin-data are comparing it to the libraries listed below
Sorting:
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆36Updated 2 weeks ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 5 months ago
- ☆50Updated 3 years ago
- ☆36Updated 7 months ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49Updated last year
- Reconstruction of transmission trees using genomic data☆65Updated 2 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆38Updated 3 weeks ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated 2 years ago
- Depth-weighted De-Mixing☆125Updated last week
- ☆74Updated last year
- Primer schemes for real-time genome epidemiology☆30Updated 2 years ago
- Influenza data pipeline to automate genotyping assignment☆37Updated last month
- Ultrafast Sample Placement on Existing Trees☆135Updated last week
- Rapid analysis and visualization of coronavirus genome variation☆48Updated 2 months ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated last year
- Programmatically interact with the GISAID database.☆78Updated 3 months ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Updated 2 months ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆58Updated 2 years ago
- SC2 variant detection and composition pipeline☆17Updated 2 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Bioinformatics Pipeline and Visualization resources☆60Updated last year
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., submitted)☆37Updated last week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆58Updated last month
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 6 months ago
- ☆25Updated last year
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆92Updated 3 months ago
- Datasets for https://github.com/nextstrain/nextclade☆41Updated this week
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆50Updated 3 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆44Updated last month