Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
☆32Mar 17, 2026Updated 2 months ago
Alternatives and similar repositories for pangolin-data
Users that are interested in pangolin-data are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 3 months ago
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- ☆16Oct 29, 2025Updated 6 months ago
- Datasets for https://github.com/nextstrain/nextclade☆45Updated this week
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Nextstrain build for mpox virus☆50Updated this week
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆454Apr 7, 2026Updated last month
- ☆12May 12, 2019Updated 7 years ago
- ☆25Jun 25, 2024Updated last year
- ☆51Mar 11, 2022Updated 4 years ago
- ☆44Feb 13, 2026Updated 3 months ago
- ☆10Apr 16, 2025Updated last year
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Informal summaries of notable SARS-CoV-2 lineages☆111May 7, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Nextstrain build for dengue virus☆14Apr 20, 2026Updated last month
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Ultrafast Sample Placement on Existing Trees☆140May 10, 2026Updated 2 weeks ago
- Repository for suggesting new lineages that should be added to the current scheme☆1,074Updated this week
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆255May 5, 2026Updated 3 weeks ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Dec 9, 2025Updated 5 months ago
- ☆12Feb 15, 2023Updated 3 years ago
- Nextstrain build for avian influenza viruses☆28Apr 20, 2026Updated last month
- RSV-A lineage definitions and proposals☆14Nov 9, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- Scripts for building the ARTIC lab-on-an-SSD☆11Sep 9, 2020Updated 5 years ago
- ☆12Feb 9, 2025Updated last year
- Coalescent simulation and likelihood for phylodynamic inference☆14May 15, 2025Updated last year
- ☆22Feb 12, 2026Updated 3 months ago
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 4 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆51Apr 25, 2025Updated last year
- Results from a model of global SARS-CoV-2 lineage competition☆39Dec 17, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for exploring large trees in the browser☆132May 7, 2026Updated 2 weeks ago
- Depth-weighted De-Mixing☆133Updated this week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆74May 14, 2026Updated last week
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Dec 8, 2025Updated 5 months ago
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆56Updated this week
- Workflow for viral analysis guided by reference☆18Apr 14, 2026Updated last month