cov-lineages / pangolin-data
Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
β30Updated 3 weeks ago
Alternatives and similar repositories for pangolin-data:
Users that are interested in pangolin-data are comparing it to the libraries listed below
- β49Updated 3 years ago
- π»βπ¨ Calculate distance matrix from ChewBBACA cgMLST allele call tablesβ27Updated last year
- Cluster Investigation & Virus Epidemiology Toolβ50Updated 2 years ago
- Influenza data pipeline to automate genotyping assignmentβ31Updated 2 months ago
- SC2 variant detection and composition pipelineβ17Updated last year
- Primer schemes for real-time genome epidemiologyβ27Updated last year
- Reconstruction of transmission trees using genomic dataβ62Updated last year
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, esβ¦β41Updated 8 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositoriesβ36Updated last week
- a collection of scripts for organising bacterial genomes by speciesβ76Updated 3 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomiβ¦β34Updated last week
- β35Updated last week
- SeqSero2β35Updated last year
- PopPUNK π¨βπ€ (POPulation Partitioning Using Nucleotide Kmers)β97Updated last month
- Phylogenetic maximum representation sampling: choosing most representative strains or taxaβ37Updated last week
- SARS-CoV-2 (Va)riant (Qu)antification in s(E)wage, designed for (Ro)bustnessβ13Updated 3 weeks ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigationsβ26Updated 7 months ago
- SISTR (Salmonella In Silico Typing Resource) command-line toolβ27Updated last month
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.β12Updated last week
- Bayesian inference of ancestral dates on bacterial phylogenetic treesβ87Updated last week
- β20Updated 9 months ago
- A MinION-based pipeline for tracking species biodiversityβ13Updated last year
- β47Updated 2 weeks ago
- The MLST pipeline developed by the PathOGiST research groupβ36Updated last year
- Bacterial surveillance pipeline.β24Updated 2 weeks ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.β33Updated last week
- Standard database for the TBProfiler toolβ29Updated last month
- Utility to alias and dealias pango lineagesβ22Updated last year
- β36Updated 3 years ago
- ARTIC SARS-CoV-2 workflow and reportingβ50Updated 4 months ago