nextstrain / nextclade_data
Datasets for https://github.com/nextstrain/nextclade
☆33Updated last week
Alternatives and similar repositories for nextclade_data:
Users that are interested in nextclade_data are comparing it to the libraries listed below
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 3 months ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆30Updated 8 months ago
- Influenza data pipeline to automate genotyping assignment☆29Updated last month
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 11 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- IS mapping software☆53Updated 3 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆24Updated last year
- A toolkit for prokaryotic comparative genomics☆46Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated last month
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Discover and annotate the virome☆39Updated 5 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆20Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆35Updated last year
- Extract metadata from biosamples in NCBI☆13Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- Bifrost graph gene caller.☆93Updated 6 months ago
- Convert GFF, fastas, annotation table and species name into Genbank.☆14Updated 3 weeks ago
- ☆45Updated 2 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Split Kmer Analysis☆63Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆63Updated 5 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆47Updated 2 months ago
- UPHL's Reference Free Pipeline☆26Updated 3 weeks ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 6 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆33Updated 3 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year