nextstrain / nextclade_dataLinks
Datasets for https://github.com/nextstrain/nextclade
☆35Updated this week
Alternatives and similar repositories for nextclade_data
Users that are interested in nextclade_data are comparing it to the libraries listed below
Sorting:
- ARTIC SARS-CoV-2 workflow and reporting☆51Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated last month
- A toolkit for prokaryotic comparative genomics☆49Updated 4 months ago
- Bifrost graph gene caller.☆95Updated 8 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆48Updated 2 years ago
- ☆27Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆25Updated this week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month
- A pipeline for running AMRfinderPlus and collating results into functional classes☆78Updated 9 months ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆39Updated this week
- UPHL's Reference Free Pipeline☆26Updated 3 weeks ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆65Updated 2 weeks ago
- ☆47Updated 3 months ago
- Bacterial surveillance pipeline.☆24Updated 3 weeks ago
- whole genome MLST analysis☆43Updated 2 months ago
- Nextstrain build for avian influenza viruses☆25Updated this week
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆57Updated 3 weeks ago
- Influenza genome analysis Nextflow workflow☆26Updated last month
- ARG normalization by mapping to the ARO ontology.☆57Updated last month
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆48Updated 3 weeks ago
- ☆47Updated last month
- Split Kmer Analysis☆65Updated 3 years ago
- Bacterial GWAS analysis☆40Updated last week
- Discover and annotate the virome☆42Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year