nextstrain / nextclade_dataLinks
Datasets for https://github.com/nextstrain/nextclade
☆41Updated this week
Alternatives and similar repositories for nextclade_data
Users that are interested in nextclade_data are comparing it to the libraries listed below
Sorting:
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆45Updated last month
- Discover and annotate the virome☆53Updated last month
- IS mapping software☆57Updated 3 years ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆47Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 6 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated last month
- ☆56Updated 3 weeks ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆67Updated last week
- ☆36Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆51Updated 4 years ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆51Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆42Updated last month
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆38Updated 3 weeks ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆75Updated last year
- IslandPath standalone software☆34Updated 2 years ago
- ☆54Updated 4 months ago
- ☆30Updated last year
- Bifrost graph gene caller.☆95Updated 2 months ago
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 7 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year