nextstrain / nextclade_dataLinks
Datasets for https://github.com/nextstrain/nextclade
☆41Updated this week
Alternatives and similar repositories for nextclade_data
Users that are interested in nextclade_data are comparing it to the libraries listed below
Sorting:
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆38Updated last week
 - BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆37Updated 6 years ago
 - ARTIC SARS-CoV-2 workflow and reporting☆50Updated 6 months ago
 - zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆64Updated last week
 - ☆36Updated 2 years ago
 - ☆50Updated last month
 - ARG normalization by mapping to the ARO ontology.☆59Updated 3 months ago
 - A pipeline for running AMRfinderPlus and collating results into functional classes☆81Updated 3 weeks ago
 - Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
 - Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆51Updated 4 years ago
 - A toolkit for prokaryotic comparative genomics☆51Updated 2 weeks ago
 - PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated 2 months ago
 - Convert GFF, fastas, annotation table and species name into Genbank.☆16Updated 5 months ago
 - IS mapping software☆57Updated 3 years ago
 - Prediction of prophages from bacterial genomes☆81Updated 4 months ago
 - A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
 - ☆73Updated 3 weeks ago
 - Follow up to Grace Blackwell's 661k dataset, for 2023☆123Updated 2 months ago
 - ☆45Updated 2 years ago
 - Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
 - A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆50Updated last month
 - SeqSero2☆38Updated last month
 - CLI tool to annotate genes with KOfam☆85Updated 2 years ago
 - Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
 - A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
 - GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 6 months ago
 - Precise host read removal☆107Updated last month
 - Bifrost graph gene caller.☆95Updated last month
 - CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆49Updated last year
 - Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆27Updated 6 months ago