Datasets for https://github.com/nextstrain/nextclade
☆46Jul 11, 2026Updated last week
Alternatives and similar repositories for nextclade_data
Users that are interested in nextclade_data are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆33Jun 10, 2026Updated last month
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆260Jul 10, 2026Updated last week
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆25Updated this week
- UPHL's Reference Free Pipeline☆29Updated this week
- emm Automatic Isolate Labeller☆15Mar 25, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆43Updated this week
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆18Nov 24, 2025Updated 7 months ago
- Depth-weighted De-Mixing☆135Updated this week
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆63Updated this week
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 4 years ago
- Nextstrain build for avian influenza viruses☆29Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Nextstrain build for mpox virus☆50Updated this week
- Official place for proposals and details around monkeypox virus lineage designations☆23Jul 7, 2026Updated last week
- ☆15Mar 12, 2026Updated 4 months ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆15Jun 14, 2022Updated 4 years ago
- Consensus sequences for each Pango lineage☆23Jun 27, 2025Updated last year
- ☆22Feb 12, 2026Updated 5 months ago
- VETA - A simple tool do evaluate variant predictors☆11Jun 17, 2024Updated 2 years ago
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Updated this week
- 🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens☆109Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python package to update the MLST database for the mlst tool.☆28May 27, 2026Updated last month
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Jul 9, 2026Updated last week
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆14May 23, 2023Updated 3 years ago
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 4 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- The tool for in silico serotyping☆66Updated this week
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆92Updated this week
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 7 months ago
- Data and scripts for Zika virus tutorial☆10Updated this week
- ☆10Apr 16, 2025Updated last year
- ☆21Apr 2, 2025Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆46Updated this week
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆61Mar 23, 2023Updated 3 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated last year