nextstrain / nextclade_dataLinks
Datasets for https://github.com/nextstrain/nextclade
☆35Updated this week
Alternatives and similar repositories for nextclade_data
Users that are interested in nextclade_data are comparing it to the libraries listed below
Sorting:
- Code Safety Inspection Service☆20Updated 2 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆51Updated 2 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆26Updated this week
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 2 months ago
- SC2 variant detection and composition pipeline☆17Updated last year
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆40Updated this week
- UPHL's Reference Free Pipeline☆26Updated this week
- Bacterial surveillance pipeline.☆24Updated 2 weeks ago
- Precise host read removal☆101Updated last week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 2 months ago
- Assembly of Nanopore Sequencing☆16Updated 2 weeks ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- ☆52Updated last year
- ARG normalization by mapping to the ARO ontology.☆57Updated this week
- Python tool to reduce size and redundancy of phylogenetic datasets☆42Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆69Updated this week
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- whole genome MLST analysis☆45Updated 2 weeks ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆48Updated 3 weeks ago
- ☆27Updated last year
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 7 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 2 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆79Updated 10 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Consensus sequences for each Pango lineage☆22Updated this week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago