nextstrain / nextclade_dataLinks
Datasets for https://github.com/nextstrain/nextclade
☆38Updated last week
Alternatives and similar repositories for nextclade_data
Users that are interested in nextclade_data are comparing it to the libraries listed below
Sorting:
- ☆35Updated 2 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆37Updated 3 weeks ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆45Updated 2 years ago
- whole genome MLST analysis☆46Updated 2 months ago
- Discover and annotate the virome☆49Updated this week
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- ☆52Updated 4 months ago
- all methods related to Enterobase☆43Updated last year
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- A genome alignment and visualization system☆30Updated 4 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 4 months ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated 7 months ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- IslandPath standalone software☆33Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆36Updated last week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- ARG normalization by mapping to the ARO ontology.☆58Updated last month
- Bifrost graph gene caller.☆96Updated 11 months ago
- Influenza data pipeline to automate genotyping assignment☆37Updated 3 months ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆50Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 5 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated last month
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Bacterial GWAS analysis☆43Updated last month