nextstrain / nextclade_dataLinks
Datasets for https://github.com/nextstrain/nextclade
☆37Updated this week
Alternatives and similar repositories for nextclade_data
Users that are interested in nextclade_data are comparing it to the libraries listed below
Sorting:
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 3 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆44Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆50Updated 6 months ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆37Updated this week
- IS mapping software☆56Updated 3 years ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆50Updated last year
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆37Updated 2 months ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆58Updated 2 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- ☆60Updated last week
- Microbiome classification pipeline☆66Updated 2 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆43Updated last week
- ☆41Updated 4 years ago
- Bifrost graph gene caller.☆95Updated 10 months ago
- Precise host read removal☆103Updated last month
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 3 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆43Updated 2 years ago
- Discover and annotate the virome☆45Updated 3 weeks ago
- ☆34Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆41Updated 5 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Bacterial GWAS analysis☆43Updated 3 weeks ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 4 months ago
- whole genome MLST analysis☆46Updated last month
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago