cov-lineages / lineages-websiteLinks
☆16Updated 2 months ago
Alternatives and similar repositories for lineages-website
Users that are interested in lineages-website are comparing it to the libraries listed below
Sorting:
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18Updated 2 years ago
- interactive barplot for amplicon sequencing☆14Updated 6 months ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆31Updated last week
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Updated 3 years ago
- ☆9Updated 2 years ago
- ☆9Updated 2 years ago
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Updated 10 months ago
- Systematic ProtEin AnnotatoR☆19Updated 8 months ago
- SARs-CoV-2 Primer schemes☆16Updated last month
- Datasets for https://github.com/nextstrain/nextclade☆35Updated this week
- Hierarchical clustering of cgMLST☆11Updated last year
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆10Updated 7 months ago
- ☆36Updated 2 months ago
- ☆17Updated last year
- Static website for the PH4AGE alliance☆12Updated last year
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆14Updated 2 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated last week
- Plasmid and antimicrobial resistance pipeline☆16Updated 5 months ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆9Updated 4 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Read contamination removal☆25Updated last year
- Clermont PCR method In-Silico☆21Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 2 months ago
- Remove host contaminants from sequencing files☆9Updated 5 years ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Updated 2 years ago
- Work on the variant_pipeline and initial r analysis used in calling variants from NGS data☆9Updated 6 years ago
- UPHL's Reference Free Pipeline☆26Updated this week
- Influenza genome analysis Nextflow workflow☆22Updated 2 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago