Nextstrain build for dengue virus
☆13Dec 16, 2025Updated 2 months ago
Alternatives and similar repositories for dengue
Users that are interested in dengue are comparing it to the libraries listed below
Sorting:
- Nextstrain build for Zika virus☆10Dec 19, 2025Updated 2 months ago
- Nextstrain build for mpox virus☆50Feb 16, 2026Updated 2 weeks ago
- Umbrella documentation project for Nextstrain☆18Updated this week
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆16Nov 24, 2025Updated 3 months ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 2 months ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Feb 19, 2026Updated 2 weeks ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- ☆13Feb 24, 2026Updated last week
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Feb 17, 2026Updated 2 weeks ago
- ☆20Apr 2, 2025Updated 11 months ago
- ☆21Feb 12, 2026Updated 3 weeks ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated 9 months ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated this week
- Amplicon Sequencing Analysis Pipeline☆19Sep 12, 2025Updated 5 months ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- Datasets for https://github.com/nextstrain/nextclade☆44Feb 27, 2026Updated last week
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Feb 20, 2026Updated 2 weeks ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Dec 9, 2025Updated 2 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Apr 25, 2025Updated 10 months ago
- ☆20Feb 12, 2026Updated 3 weeks ago
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 3 years ago
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆58Feb 25, 2026Updated last week
- Nextstrain build for avian influenza viruses☆27Feb 13, 2026Updated 3 weeks ago
- Phylogenetic inference using Stan☆23Mar 6, 2025Updated last year
- UPHL's Reference Free Pipeline☆27Feb 27, 2026Updated last week
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆116Feb 16, 2026Updated 2 weeks ago
- ☆29Jul 9, 2025Updated 7 months ago
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Apr 24, 2023Updated 2 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 3 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆41Feb 26, 2026Updated last week
- Webin command line submission program.☆39Feb 18, 2026Updated 2 weeks ago
- R library for visualizing (social science) sequence data using ggplot2☆16Nov 16, 2025Updated 3 months ago
- Collection template and associated materials for SARS-CoV-2 metadata☆37Oct 27, 2023Updated 2 years ago
- Surveillance of pathogens using population genomics and sequencing☆58Feb 13, 2026Updated 3 weeks ago
- Course materials for the Advanced Courses Working With Pathogen Genomes course run virtually in Asia 10-14 May 2021☆10Jul 5, 2024Updated last year
- A Python library for reading and writing PacBio® data files☆41Dec 11, 2025Updated 2 months ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated 2 months ago