Nextstrain build for dengue virus
☆14Apr 20, 2026Updated 2 weeks ago
Alternatives and similar repositories for dengue
Users that are interested in dengue are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextstrain build for Zika virus☆10Apr 20, 2026Updated 2 weeks ago
- Nextstrain build for mpox virus☆50Apr 20, 2026Updated 2 weeks ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- Umbrella documentation project for Nextstrain☆18Apr 23, 2026Updated 2 weeks ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 4 months ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Apr 18, 2026Updated 2 weeks ago
- Amplicon Sequencing Analysis Pipeline☆19Sep 12, 2025Updated 7 months ago
- ☆13Updated this week
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆18Nov 24, 2025Updated 5 months ago
- ☆21Feb 12, 2026Updated 2 months ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Mar 25, 2026Updated last month
- ☆21Apr 2, 2025Updated last year
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆119Apr 27, 2026Updated last week
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated 2 months ago
- ☆10Apr 24, 2024Updated 2 years ago
- Epidemiological modeling framework for pathogen population genetics and evolution.☆18Oct 7, 2024Updated last year
- Contracts for distributing rewards data availability committee members☆11Mar 3, 2026Updated 2 months ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Mar 17, 2026Updated last month
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 4 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Apr 25, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Official place for proposals and details around monkeypox virus lineage designations☆23Dec 9, 2025Updated 4 months ago
- Datasets for https://github.com/nextstrain/nextclade☆45Apr 25, 2026Updated last week
- ☆20Apr 8, 2026Updated 3 weeks ago
- UPHL's Reference Free Pipeline☆28Apr 14, 2026Updated 3 weeks ago
- R library for visualizing (social science) sequence data using ggplot2☆16Nov 16, 2025Updated 5 months ago
- ☆29Jul 9, 2025Updated 9 months ago
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆59Updated this week
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- ☆21Aug 15, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Python library for reading and writing PacBio® data files☆41Mar 6, 2026Updated 2 months ago
- Surveillance of pathogens using population genomics and sequencing☆58Apr 28, 2026Updated last week
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- ☆10Apr 20, 2018Updated 8 years ago
- Nextstrain build for avian influenza viruses☆28Apr 20, 2026Updated 2 weeks ago
- ☆13Mar 12, 2020Updated 6 years ago
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year