☆43Feb 13, 2026Updated 3 weeks ago
Alternatives and similar repositories for constellations
Users that are interested in constellations are comparing it to the libraries listed below
Sorting:
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 3 weeks ago
- ☆12Feb 15, 2023Updated 3 years ago
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Rapid analysis and visualization of coronavirus genome variation☆48Feb 28, 2026Updated last week
- ☆74Jan 23, 2024Updated 2 years ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Dec 9, 2025Updated 2 months ago
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 5 months ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 3 years ago
- ☆16Oct 29, 2025Updated 4 months ago
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆11Jul 8, 2025Updated 7 months ago
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆14May 28, 2025Updated 9 months ago
- Global phylogenies of SARS-CoV-2 sequences☆85Oct 24, 2023Updated 2 years ago
- Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.☆12Feb 2, 2023Updated 3 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Feb 20, 2026Updated 2 weeks ago
- Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes☆16Mar 11, 2025Updated 11 months ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 2 years ago
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆170Mar 22, 2023Updated 2 years ago
- A simple pipeline for bacterial assembly and quality control☆16Feb 26, 2026Updated last week
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆447Feb 19, 2026Updated 2 weeks ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Feb 17, 2026Updated 2 weeks ago
- During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific r…☆34Feb 24, 2026Updated last week
- Webin command line submission program.☆39Feb 18, 2026Updated 2 weeks ago
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆114Updated this week
- ☆50Mar 11, 2022Updated 3 years ago
- Depth-weighted De-Mixing☆127Updated this week
- Consensus sequences for each Pango lineage☆23Jun 27, 2025Updated 8 months ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆251Feb 27, 2026Updated last week
- snipit: summarise snps relative to your reference sequence☆167Jan 13, 2026Updated last month
- Resources for calling and describing the circulating lineages of SARS-CoV-2☆38Apr 6, 2021Updated 4 years ago
- ☆22Dec 9, 2025Updated 2 months ago
- Data and scripts for Zika virus tutorial☆10Oct 14, 2025Updated 4 months ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 3 months ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- ☆13Nov 26, 2025Updated 3 months ago
- Ultrafast Sample Placement on Existing Trees☆139Feb 6, 2026Updated last month