Phylogenetic inference using Stan
☆24Mar 6, 2025Updated last year
Alternatives and similar repositories for phylostan
Users that are interested in phylostan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python-interface C++ library for Bayesian phylogenetics via optimization☆41Apr 8, 2024Updated 2 years ago
- A probabilistic framework in PyTorch for phylogenetic models☆20Sep 15, 2025Updated 7 months ago
- Developing efficient Bayesian phylogenetic inference methods☆11Dec 21, 2019Updated 6 years ago
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 7 years ago
- Code for learnable topological features for phylogenetic inference via graph neural networks☆10Mar 3, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- phyloGAN is a Generative Adversarial Network (GAN) that infers phylognetic relationships.☆11Jul 8, 2024Updated last year
- ☆12Feb 9, 2025Updated last year
- Unraveling the evolutionary tapestry☆28Apr 2, 2026Updated last week
- Biological Sequence Substitution Models for Julia☆17Apr 23, 2023Updated 2 years ago
- ☆15Jun 22, 2022Updated 3 years ago
- Phylogenetic ANalyses of DiversificAtion (in Julia)☆12Jul 13, 2024Updated last year
- A linguistics-focussed command line tool for generating BEAST XML files.☆21Nov 8, 2021Updated 4 years ago
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- The uncompromising Jupyter notebook formatter.☆14Jan 26, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A versatile simulation engine for stochastic population dynamics models.☆23Nov 11, 2022Updated 3 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 7 months ago
- ☆12May 12, 2019Updated 6 years ago
- ☆22Oct 31, 2025Updated 5 months ago
- Functions for phylogenetic analyses☆36Nov 10, 2025Updated 5 months ago
- ☆16Mar 30, 2026Updated 2 weeks ago
- Inference in Bayesian Networks with R☆12Feb 6, 2023Updated 3 years ago
- Phylodynamic inference☆21May 15, 2020Updated 5 years ago
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Dec 8, 2025Updated 4 months ago
- Phylogenetic Likelihood Library 2 - experimental☆11May 12, 2025Updated 11 months ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- Map single-cell transcriptomes to copy number evolutionary trees.☆14Aug 18, 2024Updated last year
- Implementation of the EM algorithm for the detection of shifts in a phylogeny.☆19Sep 24, 2025Updated 6 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆24Aug 1, 2025Updated 8 months ago
- Nextstrain build for dengue virus☆14Updated this week
- ☆18Jun 11, 2024Updated last year
- Automorphism groups for CSets - generalizing the nauty algorithm to a broad class of data structures☆14Oct 30, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Analysis of Phylogenetics and Evolution☆73Apr 2, 2026Updated last week
- analysis of SARS-CoV-2 sequence submitted to Genbank on Dec-28-2019☆12Jan 22, 2024Updated 2 years ago
- A phylogeny dating method using least-squares algorithms and criteria☆32Oct 25, 2024Updated last year
- Phylogenetic trees in Julia☆21Sep 1, 2021Updated 4 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated 2 months ago
- Reduced-Rejection-Rate Monte Carlo for Ising spin models☆18Mar 16, 2022Updated 4 years ago
- Bayesian co-estimation of phylogenies and multiple alignments via MCMC☆49Updated this week