4ment / phylostan
Phylogenetic inference using Stan
☆24Updated 2 months ago
Alternatives and similar repositories for phylostan:
Users that are interested in phylostan are comparing it to the libraries listed below
- Estimating time trees from very large phylogenies☆26Updated 9 months ago
- Reconstruction of transmission trees using genomic data☆62Updated last year
- ☆11Updated 3 months ago
- ☆17Updated 3 weeks ago
- Phylodynamic inference☆18Updated 4 years ago
- ☆19Updated 10 months ago
- A versatile simulation engine for stochastic population dynamics models.☆22Updated 2 years ago
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆37Updated last week
- A phylogeny dating method using least-squares algorithms and criteria☆26Updated 6 months ago
- R We There Yet?☆30Updated last month
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆17Updated 2 weeks ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆32Updated last week
- ☆13Updated 6 months ago
- Epidemiological modeling framework for pathogen population genetics and evolution.☆17Updated 7 months ago
- Tutorial on Bayesian phylogenetic analysis☆46Updated 7 years ago
- Calculate distances between phylogenetic trees in R☆32Updated last week
- ☆12Updated 5 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆53Updated 9 years ago
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10Updated 7 years ago
- ☆26Updated 4 years ago
- Multinomial Logistic-Normal Models (really fast)☆20Updated 2 months ago
- Bacterial phylogenetics in BEAST 2.☆17Updated 2 years ago
- An R-wrapper for lsd2☆9Updated 2 years ago
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆28Updated 2 weeks ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 3 weeks ago
- A set of scripts for calculating pairwise SNP distance☆40Updated 2 years ago
- ☆16Updated last month
- distance based phylogenetic placement☆26Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago