Phylogenetic inference using Stan
☆24Mar 6, 2025Updated last year
Alternatives and similar repositories for phylostan
Users that are interested in phylostan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Aug 4, 2026Updated 2 months ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆41Apr 8, 2024Updated 2 years ago
- A probabilistic framework in PyTorch for phylogenetic models☆20Apr 24, 2026Updated 5 months ago
- A multi-algorithmic framework for phylogenetic inference☆14Updated this week
- Developing efficient Bayesian phylogenetic inference methods☆12Dec 21, 2019Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 3 years ago
- Code for learnable topological features for phylogenetic inference via graph neural networks☆11Mar 3, 2023Updated 3 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆17May 15, 2025Updated last year
- Phylodynamic inference☆23May 15, 2020Updated 6 years ago
- phyloGAN is a Generative Adversarial Network (GAN) that infers phylognetic relationships.☆11Jul 8, 2024Updated 2 years ago
- ☆13Jul 20, 2026Updated 2 months ago
- Unraveling the evolutionary tapestry☆28Updated this week
- Phylogenetic ANalyses of DiversificAtion (in Julia)☆12Jul 13, 2024Updated 2 years ago
- Simple phylogenetic trees in Julia to work with Diversity.jl - https://github.com/EcoJulia/Diversity.jl☆37Jul 15, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Biological Sequence Substitution Models for Julia☆17Sep 30, 2026Updated last week
- A linguistics-focussed command line tool for generating BEAST XML files.☆21Nov 8, 2021Updated 4 years ago
- ☆16Jun 22, 2022Updated 4 years ago
- ☆12May 12, 2019Updated 7 years ago
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- Bacterial phylogenetics in BEAST 2.☆20Sep 17, 2026Updated 3 weeks ago
- The uncompromising Jupyter notebook formatter.☆14Jan 26, 2024Updated 2 years ago
- Map single-cell transcriptomes to copy number evolutionary trees.☆14Aug 18, 2024Updated 2 years ago
- Functions for phylogenetic analyses☆36May 18, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A versatile simulation engine for stochastic population dynamics models.☆23Nov 11, 2022Updated 3 years ago
- Inference in Bayesian Networks with R☆12Feb 6, 2023Updated 3 years ago
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆90Updated this week
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 3 months ago
- ☆22Jun 11, 2026Updated 4 months ago
- ☆11Dec 20, 2022Updated 3 years ago
- ☆16Jun 22, 2026Updated 3 months ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆15Dec 8, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Phylogenetic Likelihood Library 2 - experimental☆12May 12, 2025Updated last year
- Implementation of the EM algorithm for the detection of shifts in a phylogeny.☆19Sep 24, 2025Updated last year
- ☆18Jun 11, 2024Updated 2 years ago
- analysis of SARS-CoV-2 sequence submitted to Genbank on Dec-28-2019☆12Jan 22, 2024Updated 2 years ago
- Analysis of Phylogenetics and Evolution☆74Sep 15, 2026Updated 3 weeks ago
- CellCoal: coalescent simulation of single-cell NGS genotypes☆15Feb 10, 2025Updated last year
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 8 months ago