Alternatives and similar repositories for phylostan:

Users that are interested in phylostan are comparing it to the libraries listed below

• christiaanjs / treeflow
  ☆13Updated 2 months ago
• danlwarren / RWTY
  R We There Yet?
  ☆30Updated 2 years ago
• thednainus / Bayesian_tutorial
  Tutorial on Bayesian phylogenetic analysis
  ☆45Updated 7 years ago
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆61Updated last year
• emvolz-phylodynamics / treestructure
  ☆17Updated 7 months ago
• mdrasmus / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆50Updated 9 years ago
• ms609 / TreeDist
  Calculate distances between phylogenetic trees in R
  ☆30Updated this week
• duchene / phylomad
  ☆19Updated 7 months ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆24Updated 9 months ago
• tothuhien / lsd-0.3beta
  ☆12Updated 5 years ago
• merlebehr / treeSeg
  Implementation of the treeSeg algorithm as an R package.
  ☆14Updated 2 years ago
• theosanderson / chronumental
  Estimating time trees from very large phylogenies
  ☆25Updated 5 months ago
• tgvaughan / bacter
  Bacterial phylogenetics in BEAST 2.
  ☆17Updated last year
• jsilve24 / fido
  Multinomial Logistic-Normal Models (really fast)
  ☆20Updated 3 months ago
• cbg-ethz / ngshmmalign
  ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…
  ☆10Updated 6 years ago
• emvolz-phylodynamics / mlesky
  ☆10Updated 8 months ago
• reptalex / phylofactor
  ☆26Updated 10 months ago
• balabanmetin / apples
  distance based phylogenetic placement
  ☆26Updated 10 months ago
• pablocarderam / opqua
  Epidemiological modeling framework for pathogen population genetics and evolution.
  ☆16Updated 3 months ago
• evolbioinfo / pastml
  Ancestral character reconstruction and visualisation for rooted phylogenetic trees
  ☆32Updated this week
• mrc-ide / skygrowth
  Phylodynamic inference
  ☆18Updated 4 years ago
• harrispopgen / mushi
  [mu]tation [s]pectrum [h]istory [i]nference
  ☆25Updated last week
• tothuhien / Rlsd2
  An R-wrapper for lsd2
  ☆9Updated last year
• crsl4 / phylogenetics-class
  A course in the theory and practice of phylogenetic inference from DNA sequence data
  ☆27Updated 9 months ago
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆31Updated 2 years ago
• mdkarcher / phylodyn
  ☆17Updated 3 years ago
• Wytamma / beastiary
  Real time and remote MCMC trace monitoring with BEASTIARY.
  ☆20Updated 4 months ago
• emvolz-phylodynamics / phydynR
  Coalescent simulation and likelihood for phylodynamic inference
  ☆13Updated last month
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆32Updated last month
• revbayes / revbayes
  Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language
  ☆65Updated this week