lenaschimmel / sc2rfLinks
SARS-Cov-2 Recombinant Finder for fasta sequences
☆50Updated 3 years ago
Alternatives and similar repositories for sc2rf
Users that are interested in sc2rf are comparing it to the libraries listed below
Sorting:
- Utility to alias and dealias pango lineages☆23Updated last year
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆36Updated 2 weeks ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 5 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆93Updated 4 months ago
- Viral (meta)-genome assembly pipeline.☆17Updated last week
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated last year
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆21Updated 2 weeks ago
- Predict plasmids from uncorrected long read data☆41Updated last month
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated this week
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Updated 2 months ago
- ☆36Updated 8 months ago
- Rapid determination of appropriate reference genomes.☆97Updated 10 months ago
- Reconstruction of transmission trees using genomic data☆68Updated 2 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆39Updated last week
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated this week
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Metagenomic Analysis in Real Time☆28Updated 3 weeks ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆60Updated 2 weeks ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 2 months ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆68Updated 3 years ago
- ☆56Updated this week
- Bacterial surveillance pipeline.☆26Updated 2 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated last week
- Recombination-free trees☆62Updated 3 months ago
- ☆25Updated last year
- SC2 variant detection and composition pipeline☆17Updated 2 years ago
- ☆50Updated 3 years ago
- Influenza data pipeline to automate genotyping assignment☆37Updated last month
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 4 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 4 months ago