SARS-Cov-2 Recombinant Finder for fasta sequences
☆50Jun 22, 2022Updated 3 years ago
Alternatives and similar repositories for sc2rf
Users that are interested in sc2rf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆51Mar 11, 2022Updated 4 years ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 4 months ago
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10May 3, 2018Updated 8 years ago
- UPHL's Reference Free Pipeline☆28Apr 14, 2026Updated 2 weeks ago
- snipit: summarise snps relative to your reference sequence☆172Jan 13, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Ultrafast Sample Placement on Existing Trees☆140Feb 6, 2026Updated 2 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated 2 months ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 2 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆253Updated this week
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 2 months ago
- Informal summaries of notable SARS-CoV-2 lineages☆111Aug 22, 2025Updated 8 months ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Mar 25, 2026Updated last month
- A tool for exploring large trees in the browser☆131Apr 20, 2026Updated 2 weeks ago
- Depth-weighted De-Mixing☆132Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 4 months ago
- Datasets for https://github.com/nextstrain/nextclade☆45Apr 25, 2026Updated last week
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- taxonomic classifier based on the kraken2 algorithms and more☆46Dec 12, 2025Updated 4 months ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- ☆19Nov 24, 2025Updated 5 months ago
- emm Automatic Isolate Labeller☆12Mar 25, 2025Updated last year
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆18Nov 24, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆69Updated this week
- IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.☆23Apr 27, 2026Updated last week
- ☆74Jan 23, 2024Updated 2 years ago
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 7 months ago
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- Rapid analysis and visualization of coronavirus genome variation☆48Apr 2, 2026Updated last month
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆114Mar 5, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆44Updated this week
- Rapid determination of appropriate reference genomes.☆101Jan 22, 2025Updated last year
- CFSAN Shigella Typing Pipeline☆15Jul 6, 2023Updated 2 years ago
- Intra-species bacterial contamination detection☆25Apr 13, 2026Updated 3 weeks ago
- Primer schemes for real-time genome epidemiology☆30Jun 14, 2023Updated 2 years ago
- ☆10Apr 16, 2025Updated last year