☆10Apr 16, 2025Updated last year
Alternatives and similar repositories for el_gato
Users that are interested in el_gato are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow pipeline for fast and accurate SNP distance estimation from WGS read data or genome assemblies☆11Jun 11, 2026Updated 4 months ago
- Nextflow version of SNVPhyl☆12Oct 24, 2024Updated 2 years ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Oct 26, 2026Updated last week
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Oct 27, 2026Updated last week
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Measles Sequence Analysis and Automation☆12Oct 16, 2026Updated 2 weeks ago
- Databases for wg/cgMLST analysis with the PN2.0 software☆10May 7, 2026Updated 5 months ago
- ☆24Sep 3, 2026Updated last month
- Benchmark and toy datasets☆12Jan 8, 2025Updated last year
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Updated this week
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Oct 20, 2026Updated last week
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated 2 years ago
- ☆19Updated this week
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 4 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆16Jul 24, 2026Updated 3 months ago
- A Python package for working with Bactopia☆12Aug 5, 2026Updated 2 months ago
- Extract subsets of ONT (Nanopore) reads based on time☆26Sep 12, 2024Updated 2 years ago
- Basestack is a platform for rapid and real time analysis of NGS data. It provides a executable application that connects standard bionfor…☆27Jan 7, 2025Updated last year
- Genome size estimation from long read overlaps☆98Sep 8, 2026Updated last month
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆14May 23, 2023Updated 3 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆14Sep 29, 2026Updated last month
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- A Python package to update the MLST database for the mlst tool.☆33Jul 22, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Nextflow pipeline for species-specific typing of bacteria☆11Oct 13, 2026Updated 2 weeks ago
- ☆13May 29, 2026Updated 5 months ago
- Pipeline for creating comprehensive viral reference sets.☆12Updated this week
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆19Aug 28, 2026Updated 2 months ago
- UPHL's Reference Free Pipeline☆29Oct 9, 2026Updated 3 weeks ago
- Amplicon genome assembly for ARTIC style primer schemes using Nextflow.☆15Updated this week
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆36Oct 6, 2026Updated 3 weeks ago
- Nextflow pipeline for bacterial clustering and linkage detection based on core genome analysis, designed to support genomic surveillance …☆12Jul 2, 2026Updated 4 months ago
- Plasmid and antimicrobial resistance pipeline☆16Sep 28, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Population analysis PIPEline 🛠🧬☆28Mar 2, 2026Updated 8 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 months ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- µbinfie blog☆19Jul 21, 2025Updated last year
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆28May 7, 2026Updated 5 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago