neherlab / SARS-CoV-2_variant-reportsLinks
Informal summaries of notable SARS-CoV-2 lineages
☆110Updated last month
Alternatives and similar repositories for SARS-CoV-2_variant-reports
Users that are interested in SARS-CoV-2_variant-reports are comparing it to the libraries listed below
Sorting:
- Repository to propose and discuss lineages☆51Updated this week
- ☆11Updated last year
- Datasets for https://github.com/nextstrain/nextclade☆39Updated this week
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Updated last month
- Nextstrain build for mpox virus☆50Updated this week
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆16Updated last month
- ☆49Updated 3 years ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated 2 years ago
- Depth-weighted De-Mixing☆120Updated this week
- Ultrafast Sample Placement on Existing Trees☆134Updated 3 weeks ago
- Programmatically interact with the GISAID database.☆78Updated 2 months ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., in prep.)☆35Updated this week
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆35Updated 2 weeks ago
- Consensus sequences for each Pango lineage☆22Updated 3 months ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆246Updated this week
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Updated 3 years ago
- Store of the trained model for pangolin to access.☆55Updated 3 years ago
- Utility to alias and dealias pango lineages☆23Updated last year
- ☆74Updated last year
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 5 months ago
- Global phylogenies of SARS-CoV-2 sequences☆85Updated last year
- ☆43Updated last year
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆53Updated this week
- Reference-based consensus creation☆56Updated this week
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last month
- Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAM☆29Updated last year
- Results from a model of global SARS-CoV-2 lineage competition☆39Updated 3 weeks ago
- Workflow for viral analysis guided by reference☆14Updated last week
- Biobakery formulae for the Homebrew package manager☆11Updated 6 years ago
- ☆25Updated last year