neherlab / SARS-CoV-2_variant-reportsLinks
Informal summaries of notable SARS-CoV-2 lineages
☆110Updated 2 weeks ago
Alternatives and similar repositories for SARS-CoV-2_variant-reports
Users that are interested in SARS-CoV-2_variant-reports are comparing it to the libraries listed below
Sorting:
- ☆11Updated last year
- Repository to propose and discuss lineages☆51Updated last week
- Datasets for https://github.com/nextstrain/nextclade☆38Updated this week
- Store of the trained model for pangolin to access.☆55Updated 2 years ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆31Updated 2 months ago
- ☆49Updated 3 years ago
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆440Updated 2 months ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆243Updated this week
- Ultrafast Sample Placement on Existing Trees☆133Updated last month
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆16Updated 3 weeks ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆36Updated last week
- Consensus sequences for each Pango lineage☆22Updated 2 months ago
- Programmatically interact with the GISAID database.☆78Updated last month
- ☆43Updated last year
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., in prep.)☆34Updated this week
- Nextstrain build for mpox virus☆50Updated this week
- Depth-weighted De-Mixing☆119Updated this week
- ☆19Updated 3 weeks ago
- ☆74Updated last year
- Global phylogenies of SARS-CoV-2 sequences☆86Updated last year
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- SARS-Cov-2 Recombinant Finder for fasta sequences☆49Updated 3 years ago
- EasyCodeML: A visual tool for analysis of selection using CodeML☆82Updated 2 years ago
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆52Updated last week
- Epidemiological modeling framework for pathogen population genetics and evolution.☆18Updated 11 months ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last month
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆108Updated 3 weeks ago
- Sydney Phylogenetics Workshop☆66Updated last month
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 4 months ago
- During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific r…☆33Updated last week