Alternatives and similar repositories for pangoLEARN

Users that are interested in pangoLEARN are comparing it to the libraries listed below

• cov-lineages / constellations
  ☆43Updated last year
• cov-lineages / scorpio
  serious constellations of reoccurring phylogenetically-independent origin
  ☆39Updated 2 years ago
• W-L / ProblematicSites_SARS-CoV2
  ☆49Updated 3 years ago
• roblanf / sarscov2phylo
  Global phylogenies of SARS-CoV-2 sequences
  ☆85Updated last year
• ukhsa-collaboration / variant_definitions
  ☆74Updated last year
• yatisht / usher
  Ultrafast Sample Placement on Existing Trees
  ☆134Updated 2 weeks ago
• maximilianh / multiSub
  Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…
  ☆36Updated 3 years ago
• ncbi / vadr
  Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
  ☆109Updated last week
• cov-lineages / pangolin-data
  Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
  ☆32Updated last month
• artic-network / civet
  Cluster Investigation & Virus Epidemiology Tool
  ☆50Updated 3 months ago
• evogytis / baltic
  baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…
  ☆112Updated last month
• connor-lab / ncov2019-artic-nf
  A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…
  ☆91Updated last year
• CDCgov / datasets-sars-cov-2
  Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)
  ☆56Updated 2 years ago
• andersen-lab / Freyja
  Depth-weighted De-Mixing
  ☆119Updated last week
• nextstrain / mpox
  Nextstrain build for mpox virus
  ☆50Updated this week
• sanger-pathogens / iva
  de novo virus assembler of Illumina paired reads
  ☆57Updated 4 years ago
• nextstrain / nextclade_data
  Datasets for https://github.com/nextstrain/nextclade
  ☆39Updated last week
• pha4ge / pipeline-resources
  Bioinformatics Pipeline and Visualization resources
  ☆58Updated last year
• UPHL-BioNGS / Cecret
  Reference-based consensus creation
  ☆56Updated this week
• arpcard / amr_curation
  A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curat…
  ☆63Updated 2 weeks ago
• theosanderson / taxonium
  A tool for exploring large trees in the browser
  ☆116Updated last week
• PoonLab / covizu
  Rapid analysis and visualization of coronavirus genome variation
  ☆48Updated 3 weeks ago
• cov-lineages / lineages
  Resources for calling and describing the circulating lineages of SARS-CoV-2
  ☆37Updated 4 years ago
• COG-UK / grapevine
  Process consensus file for COG-UK data
  ☆14Updated 4 years ago
• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆50Updated 5 months ago
• artic-network / artic-ncov2019
  ARTIC nanopore protocol for nCoV2019 novel coronavirus
  ☆170Updated 2 years ago
• nextstrain / nextclade
  Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
  ☆243Updated this week
• nextstrain / avian-flu
  Nextstrain build for avian influenza viruses
  ☆27Updated last week
• sanger-pathogens / pathogen-informatics-training
  ☆75Updated 4 years ago
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆66Updated this week