cov-lineages / pangoLEARNLinks
Store of the trained model for pangolin to access.
☆55Updated 2 years ago
Alternatives and similar repositories for pangoLEARN
Users that are interested in pangoLEARN are comparing it to the libraries listed below
Sorting:
- ☆43Updated last year
- Global phylogenies of SARS-CoV-2 sequences☆86Updated last year
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- ☆49Updated 3 years ago
- ☆74Updated last year
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆31Updated last month
- Cluster Investigation & Virus Epidemiology Tool☆50Updated last month
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆55Updated 2 years ago
- Nextstrain build for mpox virus☆48Updated last week
- Resources for calling and describing the circulating lineages of SARS-CoV-2☆37Updated 4 years ago
- Depth-weighted De-Mixing☆116Updated this week
- Process consensus file for COG-UK data☆14Updated 3 years ago
- Ultrafast Sample Placement on Existing Trees☆130Updated last week
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆110Updated 3 weeks ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆33Updated last week
- Bioinformatics Pipeline and Visualization resources☆56Updated 10 months ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆107Updated 2 weeks ago
- Reconstruction of transmission trees using genomic data☆63Updated last year
- ☆21Updated last year
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated last year
- A tool for exploring large trees in the browser☆111Updated 2 weeks ago
- SEER, reimplemented in python 🐍🔮☆122Updated last month
- Scrapping tool for GISAID data regarding SARS-CoV-2☆41Updated 2 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆125Updated last year
- Programmatically interact with the GISAID database.☆75Updated 3 months ago
- Collection template and associated materials for SARS-CoV-2 metadata☆35Updated last year
- Datasets for https://github.com/nextstrain/nextclade☆35Updated this week
- Antibiotic resistance prediction in minutes☆109Updated 7 months ago