nextstrain / mpoxLinks
Nextstrain build for mpox virus
☆50Updated this week
Alternatives and similar repositories for mpox
Users that are interested in mpox are comparing it to the libraries listed below
Sorting:
- Rapid analysis and visualization of coronavirus genome variation☆48Updated 3 weeks ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Updated last month
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆35Updated last week
- ☆49Updated 3 years ago
- Reconstruction of transmission trees using genomic data☆63Updated 2 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 3 months ago
- ☆74Updated last year
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- Estimating time trees from very large phylogenies☆28Updated last year
- Utility to alias and dealias pango lineages☆23Updated last year
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated 2 years ago
- Global phylogenies of SARS-CoV-2 sequences☆85Updated last year
- Reference-based consensus creation☆56Updated this week
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated last year
- Influenza data pipeline to automate genotyping assignment☆37Updated 4 months ago
- Datasets for https://github.com/nextstrain/nextclade☆39Updated last week
- Programmatically interact with the GISAID database.☆78Updated 2 months ago
- SARs-CoV-2 Primer schemes☆16Updated 5 months ago
- Bioinformatics Pipeline and Visualization resources☆58Updated last year
- Nextstrain build for avian influenza viruses☆27Updated last week
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated last week
- Scalable relaxed clock phylogenetic dating☆25Updated last month
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Updated 3 weeks ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 2 weeks ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆18Updated 2 weeks ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆56Updated last week
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆58Updated 6 months ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆49Updated 3 years ago
- ☆20Updated 6 months ago
- ☆18Updated 6 months ago