Nextstrain build for mpox virus
☆50Feb 16, 2026Updated last week
Alternatives and similar repositories for mpox
Users that are interested in mpox are comparing it to the libraries listed below
Sorting:
- Nextstrain build for dengue virus☆13Dec 16, 2025Updated 2 months ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Dec 9, 2025Updated 2 months ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Feb 17, 2026Updated last week
- Nextstrain build for Zika virus☆10Dec 19, 2025Updated 2 months ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Feb 4, 2026Updated 3 weeks ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆250Feb 5, 2026Updated 3 weeks ago
- ☆16Oct 29, 2025Updated 4 months ago
- Datasets for https://github.com/nextstrain/nextclade☆43Feb 16, 2026Updated last week
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Estimating time trees from very large phylogenies☆28Jul 21, 2024Updated last year
- Sequence Indexing engine for Large Omics data☆18Updated this week
- ☆12Feb 15, 2023Updated 3 years ago
- Data and scripts for Zika virus tutorial☆10Oct 14, 2025Updated 4 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Apr 25, 2025Updated 10 months ago
- Umbrella documentation project for Nextstrain☆18Updated this week
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆14May 28, 2025Updated 9 months ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆41Updated this week
- Ultrafast Sample Placement on Existing Trees☆139Feb 6, 2026Updated 3 weeks ago
- Package for probabilistic forecast reconciliation via score optimisation☆13Apr 5, 2023Updated 2 years ago
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2☆29Updated this week
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆58Updated this week
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆447Feb 19, 2026Updated last week
- Nextstrain build for avian influenza viruses☆27Feb 13, 2026Updated 2 weeks ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 2 weeks ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Jun 14, 2022Updated 3 years ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated 9 months ago
- ☆29Jul 9, 2025Updated 7 months ago
- A tool for exploring large trees in the browser☆123Feb 4, 2026Updated 3 weeks ago
- RNA-seq, QC and differential analysis pipeline☆17Nov 25, 2025Updated 3 months ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆61Updated this week
- Data and statistical models for biomarker shedding.☆15Updated this week
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 2 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 3 years ago
- A SARS-CoV-2 Mutation Pattern Query Tool☆17Mar 21, 2023Updated 2 years ago
- ☆50Mar 11, 2022Updated 3 years ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆50Updated this week
- ☆20Feb 12, 2026Updated 2 weeks ago