nextstrain / mpoxLinks
Nextstrain build for mpox virus
☆50Updated this week
Alternatives and similar repositories for mpox
Users that are interested in mpox are comparing it to the libraries listed below
Sorting:
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last week
- ☆50Updated 3 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Updated last week
- Reconstruction of transmission trees using genomic data☆72Updated 2 years ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Updated 2 weeks ago
- Scalable relaxed clock phylogenetic dating☆28Updated 4 months ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 7 months ago
- Estimating time trees from very large phylogenies☆28Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 4 months ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated 2 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated last month
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆58Updated 10 months ago
- rhierbaps: R implementation of hierBAPS☆37Updated 4 years ago
- Utility to alias and dealias pango lineages☆23Updated 2 years ago
- ☆74Updated 2 years ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆59Updated 2 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆41Updated this week
- ☆21Updated last month
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 9 months ago
- Programmatically interact with the GISAID database.☆80Updated 5 months ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated last year
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Updated 4 months ago
- Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification☆15Updated 2 years ago
- Bioinformatics Pipeline and Visualization resources☆60Updated last year
- Reference-based consensus creation☆57Updated this week
- Influenza data pipeline to automate genotyping assignment☆39Updated 3 months ago
- 🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens☆90Updated this week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆61Updated this week
- Datasets for https://github.com/nextstrain/nextclade☆43Updated this week
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago