nextstrain / mpoxLinks
Nextstrain build for mpox virus
☆48Updated last week
Alternatives and similar repositories for mpox
Users that are interested in mpox are comparing it to the libraries listed below
Sorting:
- Rapid analysis and visualization of coronavirus genome variation☆48Updated this week
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆31Updated last month
- ☆49Updated 3 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆33Updated last week
- Datasets for https://github.com/nextstrain/nextclade☆35Updated this week
- Reconstruction of transmission trees using genomic data☆63Updated last year
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- Cluster Investigation & Virus Epidemiology Tool☆50Updated last month
- Phylogenetics between and within hosts at once, all along the genome.☆49Updated 9 months ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆55Updated 2 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆48Updated last year
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆58Updated 3 months ago
- Bioinformatics Pipeline and Visualization resources☆56Updated 10 months ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Updated this week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 3 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 2 months ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated 11 months ago
- Utility to alias and dealias pango lineages☆22Updated last year
- Primer schemes for real-time genome epidemiology☆29Updated 2 years ago
- ☆16Updated 3 months ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆49Updated last year
- Reference-based consensus creation☆55Updated this week
- ☆20Updated 3 months ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆36Updated this week
- ☆74Updated last year
- A set of scripts for calculating pairwise SNP distance☆42Updated 2 years ago
- Programmatically interact with the GISAID database.☆75Updated 3 months ago
- Benchmark datasets for WGS analysis☆39Updated 5 years ago
- Nextstrain build for avian influenza viruses☆25Updated this week