czbiohub-sf / sc2-illumina-pipeline
Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub
☆25Updated 3 years ago
Alternatives and similar repositories for sc2-illumina-pipeline
Users that are interested in sc2-illumina-pipeline are comparing it to the libraries listed below
Sorting:
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 8 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- ☆26Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- ☆27Updated 3 years ago
- Amplicon Sequencing Analysis Pipeline☆16Updated last month
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- full taxonomer cython repository☆22Updated 5 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Master of Pores 2☆23Updated 5 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Population-wide Deletion Calling☆35Updated last month
- This repository hosts a large collection of Nextflow snippets☆57Updated 3 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- ☆27Updated this week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 months ago
- Whole Genome Sequenceing Structural Variation Pipelines☆16Updated 6 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 10 months ago
- Improved Phased Assembler☆28Updated 3 years ago