ARTIC SARS-CoV-2 workflow and reporting
☆51Apr 25, 2025Updated last year
Alternatives and similar repositories for wf-artic
Users that are interested in wf-artic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The ARTIC fieldbioinformatics pipeline☆133Apr 28, 2026Updated last month
- SARS-CoV-2 workflow for nanopore sequence data☆42Apr 15, 2026Updated last month
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 7 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆171Mar 22, 2023Updated 3 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆40Apr 6, 2026Updated last month
- A message queue for genomic surveillance☆20Oct 14, 2021Updated 4 years ago
- ☆22Apr 28, 2026Updated last month
- a tool for designing primer panels for multiplex PCR.☆108Feb 5, 2024Updated 2 years ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Mar 25, 2026Updated 2 months ago
- ☆24Feb 2, 2026Updated 3 months ago
- ☆17Mar 11, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Nextstrain build for mpox virus☆50Updated this week
- Python bindings to spoa☆22Dec 3, 2025Updated 5 months ago
- A nextflow pipeline with a GMS touch for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbio…☆10Jan 23, 2026Updated 4 months ago
- Nextstrain build for dengue virus☆14Apr 20, 2026Updated last month
- ☆27Aug 2, 2023Updated 2 years ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆23Apr 1, 2026Updated last month
- Informal summaries of notable SARS-CoV-2 lineages☆111May 7, 2026Updated 3 weeks ago
- Depth-weighted De-Mixing☆133May 22, 2026Updated last week
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆60Mar 23, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Assembly and intrahost/low-frequency variant calling for viral samples☆163May 13, 2026Updated 2 weeks ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Dec 9, 2025Updated 5 months ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 3 months ago
- ☆12Feb 15, 2023Updated 3 years ago
- ☆45Mar 13, 2026Updated 2 months ago
- ☆10Apr 16, 2025Updated last year
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Mar 17, 2026Updated 2 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10May 15, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Assemble bacterial isolate genomes from Nanopore reads☆133Jan 22, 2025Updated last year
- VIGOR4☆22Aug 15, 2025Updated 9 months ago
- SC2 variant detection and composition pipeline☆19Jul 14, 2023Updated 2 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆255May 5, 2026Updated 3 weeks ago
- Stitch together Nanopore tiled amplicon data without polishing a reference☆17Jan 29, 2024Updated 2 years ago
- Ultrafast Sample Placement on Existing Trees☆140May 21, 2026Updated last week
- Repo for PrimerSchemes☆17May 15, 2026Updated 2 weeks ago