epi2me-labs / wf-artic
ARTIC SARS-CoV-2 workflow and reporting
☆49Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for wf-artic
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆71Updated 3 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆42Updated 4 years ago
- Simple bacterial assembly and annotation pipeline☆63Updated this week
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆47Updated 2 years ago
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆41Updated 3 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- ☆79Updated last year
- A scalable bacterial genome assembly, annotation and analysis pipeline☆71Updated 11 months ago
- Split Kmer Analysis☆63Updated 2 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- Standard database for the TBProfiler tool☆29Updated last month
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆56Updated 5 months ago
- Bioinformatics Pipeline and Visualization resources☆54Updated 2 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- de novo virus assembler of Illumina paired reads