serious constellations of reoccurring phylogenetically-independent origin
☆39Feb 13, 2026Updated 7 months ago
Alternatives and similar repositories for scorpio
Users that are interested in scorpio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆45Feb 13, 2026Updated 7 months ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆34Aug 17, 2026Updated last month
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Ultrafast Sample Placement on Existing Trees☆141Jun 1, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆455Aug 17, 2026Updated last month
- Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.☆12Feb 2, 2023Updated 3 years ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Jul 7, 2026Updated 2 months ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆14Updated this week
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- Nextstrain build for mpox virus☆50Updated this week
- RSV-A lineage definitions and proposals☆16Nov 9, 2025Updated 10 months ago
- ☆75Jan 23, 2024Updated 2 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆263Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 2 years ago
- The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…☆25Jul 11, 2026Updated 2 months ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- snipit: summarise snps relative to your reference sequence☆178Jan 13, 2026Updated 8 months ago
- A tool for exploring large trees in the browser☆134Sep 4, 2026Updated 3 weeks ago
- R Data Exploration for Serratus☆17Mar 29, 2023Updated 3 years ago
- ASMNGS18 - 2018 Conference Details☆12Oct 3, 2018Updated 7 years ago
- Repository for suggesting new lineages that should be added to the current scheme☆1,078Updated this week
- Nextstrain build for avian influenza viruses☆29Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Feb 15, 2023Updated 3 years ago
- Consensus sequences for each Pango lineage☆24Jun 27, 2025Updated last year
- Resources for calling and describing the circulating lineages of SARS-CoV-2☆38Apr 6, 2021Updated 5 years ago
- Course materials for the Advanced Courses Working With Pathogen Genomes course run virtually in Asia 10-14 May 2021☆11Jul 5, 2024Updated 2 years ago
- Racmacs R package for performing antigenic cartography☆24Jul 8, 2026Updated 2 months ago
- ☆12May 12, 2019Updated 7 years ago
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆171Mar 22, 2023Updated 3 years ago
- Global phylogenies of SARS-CoV-2 sequences☆86Oct 24, 2023Updated 2 years ago
- The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize patho…☆29Aug 26, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ARTIC SARS-CoV-2 workflow and reporting☆52Apr 25, 2025Updated last year
- Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes☆28Dec 9, 2024Updated last year
- Influenza genome analysis Nextflow workflow☆28Jun 3, 2026Updated 3 months ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆40Updated this week
- Rapid analysis and visualization of coronavirus genome variation☆48Apr 2, 2026Updated 5 months ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆15Jun 14, 2022Updated 4 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago