serious constellations of reoccurring phylogenetically-independent origin
☆39Feb 13, 2026Updated 2 months ago
Alternatives and similar repositories for scorpio
Users that are interested in scorpio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆44Feb 13, 2026Updated 2 months ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Mar 17, 2026Updated last month
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- ☆16Oct 29, 2025Updated 5 months ago
- Ultrafast Sample Placement on Existing Trees☆140Feb 6, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆451Apr 7, 2026Updated last week
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.☆12Feb 2, 2023Updated 3 years ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Dec 9, 2025Updated 4 months ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated 3 months ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 3 years ago
- Nextstrain build for mpox virus☆50Updated this week
- ☆74Jan 23, 2024Updated 2 years ago
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆253Mar 17, 2026Updated last month
- The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…☆24Apr 11, 2026Updated last week
- A tool for exploring large trees in the browser☆131Updated this week
- R Data Exploration for Serratus☆16Mar 29, 2023Updated 3 years ago
- ASMNGS18 - 2018 Conference Details☆12Oct 3, 2018Updated 7 years ago
- snipit: summarise snps relative to your reference sequence☆170Jan 13, 2026Updated 3 months ago
- Repository for suggesting new lineages that should be added to the current scheme☆1,074Mar 30, 2026Updated 2 weeks ago
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆14May 28, 2025Updated 10 months ago
- ☆12Feb 15, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Nextstrain build for avian influenza viruses☆27Updated this week
- Course materials for the Advanced Courses Working With Pathogen Genomes course run virtually in Asia 10-14 May 2021☆11Jul 5, 2024Updated last year
- Resources for calling and describing the circulating lineages of SARS-CoV-2☆38Apr 6, 2021Updated 5 years ago
- Racmacs R package for performing antigenic cartography☆24Jun 27, 2024Updated last year
- Consensus sequences for each Pango lineage☆23Jun 27, 2025Updated 9 months ago
- Global phylogenies of SARS-CoV-2 sequences☆85Oct 24, 2023Updated 2 years ago
- The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize patho…☆28Updated this week
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆170Mar 22, 2023Updated 3 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Apr 25, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated last month
- Rapid analysis and visualization of coronavirus genome variation☆48Apr 2, 2026Updated 2 weeks ago
- ☆12May 12, 2019Updated 6 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Apr 10, 2026Updated last week
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Jun 14, 2022Updated 3 years ago