corneliusroemer / pango_aliasorLinks
Utility to alias and dealias pango lineages
β23Updated last year
Alternatives and similar repositories for pango_aliasor
Users that are interested in pango_aliasor are comparing it to the libraries listed below
Sorting:
- 𧬠π» TOSTADAS β Toolkit for Open Sequence Triage, Annotation and DAtabase Submissionβ28Updated 3 weeks ago
- app to collapse Pango lineages for reportingβ12Updated last year
- Influenza data pipeline to automate genotyping assignmentβ37Updated 4 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxaβ39Updated 2 weeks ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositoriesβ38Updated last month
- Fast, scalable, accurate and accessible Bayesian phylogeneticsβ40Updated last week
- Consensus sequences for U.S. H5N1 clade 2.3.4.4bβ35Updated last week
- SARs-CoV-2 Primer schemesβ16Updated 5 months ago
- SARS-Cov-2 Recombinant Finder for fasta sequencesβ49Updated 3 years ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.β18Updated 2 years ago
- REcombination BARcode detector.β16Updated last year
- Viral (meta)-genome assembly pipeline.β17Updated last month
- Course materials for an introduction to SARS-CoV-2 sequencing data analysisβ14Updated last year
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.β47Updated this week
- Interpretative standards for AMR genotypesβ25Updated 3 weeks ago
- Consensus sequences for each Pango lineageβ22Updated 3 months ago
- β22Updated 7 months ago
- π»βπ¨ Calculate distance matrix from ChewBBACA cgMLST allele call tablesβ29Updated 2 years ago
- emm Automatic Isolate Labellerβ12Updated 6 months ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomiβ¦β56Updated last week
- Bacterial surveillance pipeline.β26Updated this week
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixturesβ13Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomesβ30Updated this week
- UPHL's Reference Free Pipelineβ26Updated last week
- Get microbial sequence data easier and fasterβ28Updated 5 years ago
- β18Updated 6 months ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignmentsβ32Updated last month
- Cluster Investigation & Virus Epidemiology Toolβ50Updated 3 months ago
- Nextstrain build for avian influenza virusesβ27Updated last week
- Recombination-free treesβ60Updated last month