corneliusroemer / pango_aliasor
Utility to alias and dealias pango lineages
☆22Updated last year
Alternatives and similar repositories for pango_aliasor
Users that are interested in pango_aliasor are comparing it to the libraries listed below
Sorting:
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18Updated 2 years ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆36Updated this week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆37Updated last week
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆27Updated this week
- SARs-CoV-2 Primer schemes☆15Updated 2 years ago
- Consensus sequences for each Pango lineage☆21Updated this week
- ☆16Updated last month
- app to collapse Pango lineages for reporting☆11Updated last year
- UPHL's Reference Free Pipeline☆26Updated last week
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- REcombination BARcode detector.☆13Updated last year
- ☆20Updated 10 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated last month
- ☆21Updated 2 months ago
- Bacterial surveillance pipeline.☆24Updated this week
- Estimating time trees from very large phylogenies☆26Updated 9 months ago
- Nextstrain build for avian influenza viruses☆25Updated this week
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆26Updated 8 months ago
- emm Automatic Isolate Labeller☆10Updated last month
- Recombination-free trees☆58Updated last month
- Interpretation aids for genomic epidemiology☆9Updated 6 months ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆31Updated this week
- ☆35Updated last month
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆34Updated this week
- ☆20Updated last month
- A pipeline for bioinformatics analysis of bacterial genomes☆28Updated this week
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 10 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 10 months ago
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆11Updated last month