cov-lineages / pangolinLinks
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
☆437Updated last month
Alternatives and similar repositories for pangolin
Users that are interested in pangolin are comparing it to the libraries listed below
Sorting:
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆240Updated last week
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆348Updated 2 years ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆316Updated 3 weeks ago
- A flexible pipeline for complete analysis of bacterial genomes☆464Updated 2 months ago
- Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the…☆248Updated last year
- Automatically exported from code.google.com/p/figtree☆429Updated 3 weeks ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆241Updated last month
- 🌈 Interactive analysis of metagenomics data☆421Updated 10 months ago
- Source for the QIIME 2 Framework (Q2F).☆509Updated this week
- NCBI Prokaryotic Genome Annotation Pipeline☆342Updated this week
- Store of the trained model for pangolin to access.☆55Updated 2 years ago
- hybrid assembly pipeline for bacterial genomes☆602Updated 11 months ago
- Assemble large genomes using short reads☆322Updated 3 months ago
- Genome assembly evaluation tool☆445Updated 8 months ago
- Data and analysis for NA12878 genome on nanopore☆392Updated 2 years ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆512Updated this week
- Fast Whole-Genome Similarity (ANI) Estimation☆416Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆516Updated last year
- RAxML Next Generation: faster, easier-to-use and more flexible☆429Updated 2 weeks ago
- ☆341Updated 4 months ago
- A quality control analysis tool for high throughput sequencing data☆517Updated last year
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆293Updated 2 months ago
- Rapid large-scale prokaryote pan genome analysis☆353Updated 3 years ago
- An accurate GFF3/GTF lift over pipeline☆491Updated last year
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆170Updated 2 years ago
- A single molecule sequence assembler for genomes large and small.☆683Updated this week
- NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.☆439Updated last week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆532Updated last month
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆781Updated 2 weeks ago
- Gene cluster comparison figure generator☆595Updated 7 months ago