Software package for assigning SARS-CoV-2 genome sequences to global lineages.
☆454Apr 7, 2026Updated last month
Alternatives and similar repositories for pangolin
Users that are interested in pangolin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆255May 5, 2026Updated 3 weeks ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 3 months ago
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆171Mar 22, 2023Updated 3 years ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Mar 17, 2026Updated 2 months ago
- Repository for suggesting new lineages that should be added to the current scheme☆1,074May 21, 2026Updated last week
- Ultrafast Sample Placement on Existing Trees☆140May 21, 2026Updated last week
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49May 14, 2026Updated 2 weeks ago
- The ARTIC fieldbioinformatics pipeline☆133Apr 28, 2026Updated last month
- snipit: summarise snps relative to your reference sequence☆173Jan 13, 2026Updated 4 months ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆251Updated this week
- Resources for calling and describing the circulating lineages of SARS-CoV-2☆38Apr 6, 2021Updated 5 years ago
- ☆51Mar 11, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆44Feb 13, 2026Updated 3 months ago
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆347Apr 12, 2023Updated 3 years ago
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- Global phylogenies of SARS-CoV-2 sequences☆86Oct 24, 2023Updated 2 years ago
- Depth-weighted De-Mixing☆133May 22, 2026Updated last week
- Nextstrain build for mpox virus☆50Updated this week
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆135May 20, 2026Updated last week
- A tool for exploring large trees in the browser☆132May 7, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Rapid analysis and visualization of coronavirus genome variation☆48Apr 2, 2026Updated last month
- ARTIC SARS-CoV-2 workflow and reporting☆51Apr 25, 2025Updated last year
- Cluster Investigation & Virus Epidemiology Tool☆50Jun 17, 2025Updated 11 months ago
- ☆74Jan 23, 2024Updated 2 years ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Jan 24, 2022Updated 4 years ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆122Apr 27, 2026Updated last month
- ☆38Jan 12, 2026Updated 4 months ago
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆163May 13, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- Rapid haploid variant calling and core genome alignment☆585Dec 12, 2025Updated 5 months ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆115May 22, 2026Updated last week
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- Pipeline components for real-time phylodynamic analysis☆275May 20, 2026Updated last week
- Nextstrain build for SARS-CoV-2☆1,359Updated this week