cov-lineages / pangolinLinks
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
☆443Updated last week
Alternatives and similar repositories for pangolin
Users that are interested in pangolin are comparing it to the libraries listed below
Sorting:
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆247Updated 2 weeks ago
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆349Updated 2 years ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆333Updated last week
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆247Updated this week
- A flexible pipeline for complete analysis of bacterial genomes☆485Updated 2 weeks ago
- Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the…☆259Updated last year
- Source for the QIIME 2 Framework (Q2F).☆522Updated 2 weeks ago
- Store of the trained model for pangolin to access.☆55Updated 3 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆552Updated 3 weeks ago
- Ultra-deep search for novel viruses☆272Updated 2 years ago
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆194Updated 2 months ago
- 🌈 Interactive analysis of metagenomics data☆434Updated 2 months ago
- Automatically exported from code.google.com/p/figtree☆447Updated 4 months ago
- Read alignment statistics for metagenomics☆379Updated last week
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆394Updated 3 weeks ago
- Interactively explore metagenomes and more from a web browser.☆491Updated 3 years ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆529Updated this week
- NCBI Prokaryotic Genome Annotation Pipeline☆359Updated last week
- Ultrafast Sample Placement on Existing Trees☆135Updated last week
- Assemble large genomes using short reads☆326Updated 7 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆437Updated 3 months ago
- Mummer alignment tool☆535Updated 9 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆295Updated 6 months ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆441Updated 3 weeks ago
- The second version of the Kraken taxonomic sequence classification system☆846Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline☆366Updated 4 months ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆314Updated 6 months ago
- ☆346Updated 8 months ago
- HyPhy: Hypothesis testing using Phylogenies☆245Updated last week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆396Updated 5 months ago