andersen-lab / FreyjaLinks
Depth-weighted De-Mixing
☆125Updated last week
Alternatives and similar repositories for Freyja
Users that are interested in Freyja are comparing it to the libraries listed below
Sorting:
- snipit: summarise snps relative to your reference sequence☆162Updated 2 months ago
- The ARTIC fieldbioinformatics pipeline☆126Updated last month
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆130Updated last week
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated 2 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆144Updated 3 months ago
- ☆149Updated last year
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆116Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆162Updated 7 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆87Updated last week
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆105Updated 9 months ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆207Updated 2 months ago
- Sorts amplicons from Nanopore sequencing data based on similarity