artic-network / lab-on-an-SSD

Related projects: ⓘ

• tseemann / scapper
  Whole genome core alignments from multiple draft genomes
  ☆12Updated 8 years ago
• tseemann / ekidna
  Assembly based core genome SNP alignments for bacteria
  ☆25Updated 4 years ago
• snake-flu / type_variants
  ☆8Updated 3 years ago
• kristyhoran / bohra
  ☆26Updated this week
• fbreitwieser / card-krakendb
  Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database
  ☆10Updated 7 years ago
• harry-thorpe / piggy
  Pipeline for analysing intergenic regions in bacteria
  ☆36Updated 4 years ago
• andrewjpage / krocus
  Predict MLST directly from uncorrected long reads
  ☆25Updated 2 years ago
• tseemann / seeka
  Get microbial sequence data easier and faster
  ☆28Updated 4 years ago
• bacpop / pp-sketchlib
  Library of sketching functions used by PopPUNK
  ☆30Updated 5 months ago
• typhoidgenomics / genotyphi
  Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)
  ☆22Updated 4 months ago
• B-UMMI / INNUca
  INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search
  ☆13Updated last year
• tseemann / mokka
  Annotate your metagenome assemblies
  ☆11Updated 6 years ago
• CDCgov / seqsender
  Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
  ☆32Updated last week
• theiagen / public_health_bacterial_genomics
  ☆26Updated last year
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆28Updated 6 years ago
• ktrappe / daisy
  Horizontal Gene Transfer Detection by Mapping Sequencing Reads
  ☆20Updated 7 years ago
• CFSAN-Biostatistics / shigatyper
  CFSAN Shigella Typing Pipeline
  ☆14Updated last year
• asmngs / asmngs20
  ASMNGS20 - 2020 Conference Details
  ☆15Updated 2 years ago
• rrwick / Rebaler
  reference-based long read assemblies of bacterial genomes
  ☆46Updated 3 years ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆46Updated last year
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆45Updated last year
• gtonkinhill / pairsnp
  A set of scripts for calculating pairwise SNP distance
  ☆37Updated last year
• rrwick / Verticall
  Recombination-free trees
  ☆55Updated last year
• nebiolabs / ampseer
  Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…
  ☆14Updated 6 months ago
• OLC-Bioinformatics / ConFindr
  Intra-species bacterial contamination detection
  ☆22Updated last year
• drpowell / FriPan
  Interactive, web tool for exploring pan-genome of bacterial strains
  ☆43Updated last year
• UPHL-BioNGS / Grandeur
  UPHL's Reference Free Pipeline
  ☆23Updated 2 weeks ago
• BU-ISCIII / SARS-Cov2_analysis
  Documentation for analyzing SARS-Cov2 samples.
  ☆11Updated 4 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆21Updated 5 months ago
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 4 years ago