Neclow / GradMELinks
Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees
☆12Updated 2 years ago
Alternatives and similar repositories for GradME
Users that are interested in GradME are comparing it to the libraries listed below
Sorting:
- ☆18Updated 5 months ago
- Estimating time trees from very large phylogenies☆27Updated last year
- Phylogenetic inference using Stan☆23Updated 6 months ago
- ☆11Updated 7 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆39Updated last week
- A phylogeny dating method using least-squares algorithms and criteria☆29Updated 10 months ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆36Updated last week
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆87Updated last year
- ☆12Updated 6 years ago
- ☆18Updated last month
- Scalable relaxed clock phylogenetic dating☆25Updated 2 weeks ago
- Real time and remote MCMC trace monitoring with BEASTIARY.☆20Updated 4 months ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Updated 7 years ago
- R We There Yet?☆31Updated 5 months ago
- A versatile simulation engine for stochastic population dynamics models.☆22Updated 2 years ago
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆21Updated 4 months ago
- Phylodynamic inference☆18Updated 5 years ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last month
- Reconstruction of transmission trees using genomic data☆63Updated last year
- ☆20Updated 5 months ago
- Programmatically interact with the GISAID database.☆78Updated last month
- Tutorial on Bayesian phylogenetic analysis☆47Updated 7 years ago
- Calculate distances between phylogenetic trees in R☆33Updated this week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 5 months ago
- Bacterial phylogenetics in BEAST 2.☆18Updated 2 years ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., in prep.)☆34Updated 2 weeks ago
- ☆19Updated last year
- ☆14Updated this week
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆15Updated 6 months ago
- Genome wide orthology inference and dNdS estimation☆96Updated 2 weeks ago