Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees
☆12Sep 6, 2023Updated 2 years ago
Alternatives and similar repositories for GradME
Users that are interested in GradME are comparing it to the libraries listed below
Sorting:
- phylo2vec: a library for vector-based phylogenetic tree manipulation☆20Updated this week
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- Phylogenetic inference using Stan☆23Mar 6, 2025Updated 11 months ago
- Developing efficient Bayesian phylogenetic inference methods☆12Dec 21, 2019Updated 6 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Nov 28, 2025Updated 3 months ago
- ☆11Feb 9, 2025Updated last year
- ☆12May 12, 2019Updated 6 years ago
- Code for learnable topological features for phylogenetic inference via graph neural networks☆10Mar 3, 2023Updated 2 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14May 15, 2025Updated 9 months ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Dec 8, 2025Updated 2 months ago
- ☆13Oct 30, 2024Updated last year
- Benchmark empirical datasets for phylogenetic method development☆19Dec 5, 2023Updated 2 years ago
- A versatile simulation engine for stochastic population dynamics models.☆23Nov 11, 2022Updated 3 years ago
- ☆20Nov 18, 2021Updated 4 years ago
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆19Jan 21, 2026Updated last month
- ☆18Oct 3, 2025Updated 4 months ago
- Estimating time trees from very large phylogenies☆28Jul 21, 2024Updated last year
- Phylogenetic trees in Julia☆21Sep 1, 2021Updated 4 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 5 months ago
- Analysis of Phylogenetics and Evolution☆73Feb 18, 2026Updated last week
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Feb 17, 2026Updated last week
- Fit, evaluate, and visualise generalised additive models (GAMs) in native Julia☆33Nov 16, 2025Updated 3 months ago
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- Examples on INLA within MCMC☆12May 15, 2017Updated 8 years ago
- ☆12Mar 11, 2025Updated 11 months ago
- An R package containing functions used in the CDC Flu Forecasting competition☆11Oct 18, 2020Updated 5 years ago
- ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…☆11Dec 11, 2021Updated 4 years ago
- Utilities and distributions for (birth-death) skyline models.☆10Aug 27, 2019Updated 6 years ago
- Material do curso de text mining para cientistas sociais do CPDOC☆11May 8, 2025Updated 9 months ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- babette is an R package to work with BEAST2☆46Dec 20, 2025Updated 2 months ago
- Pretrained spoken language classifiers from audio.☆10Jan 21, 2021Updated 5 years ago
- Nextstrain build for dengue virus☆13Dec 16, 2025Updated 2 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Dec 5, 2025Updated 2 months ago
- A LaTeX class for Horizon Europe RIA and IA grant proposals