Nextstrain build for avian influenza viruses
☆28Apr 20, 2026Updated 2 weeks ago
Alternatives and similar repositories for avian-flu
Users that are interested in avian-flu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Updated this week
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆59Updated this week
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 2 months ago
- Repo for PrimerSchemes☆17Mar 31, 2026Updated last month
- Data and scripts for Zika virus tutorial☆10Oct 14, 2025Updated 6 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆44Updated this week
- ☆12Feb 15, 2023Updated 3 years ago
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 10 years ago
- Consensus sequences for each Pango lineage☆23Jun 27, 2025Updated 10 months ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Dec 9, 2025Updated 4 months ago
- A tool for exploring large trees in the browser☆131Apr 20, 2026Updated 2 weeks ago
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- An open-source software package to power microbial genomic databases☆70Updated this week
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 4 months ago
- Datasets for https://github.com/nextstrain/nextclade☆45Apr 25, 2026Updated last week
- Predicting Future Influenza Virus Sequences with Machine Learning☆31Feb 11, 2018Updated 8 years ago
- ☆16Oct 29, 2025Updated 6 months ago
- k-mers and the like☆22Apr 27, 2026Updated last week
- Umbrella documentation project for Nextstrain☆18Apr 23, 2026Updated last week
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆23Apr 1, 2026Updated last month
- Bitpacked sequence trait and implementation☆18Feb 27, 2026Updated 2 months ago
- ☆23Feb 2, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize patho…☆28Updated this week
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆53Updated this week
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆253Updated this week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆41Mar 31, 2026Updated last month
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Ultra-rapid detection of viral variants directly from sequencing data☆40Feb 17, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated 11 months ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 2 months ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Real-time tracking of influenza evolution☆88Sep 8, 2023Updated 2 years ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Mar 17, 2026Updated last month