nextstrain / avian-fluLinks
Nextstrain build for avian influenza viruses
☆25Updated last month
Alternatives and similar repositories for avian-flu
Users that are interested in avian-flu are comparing it to the libraries listed below
Sorting:
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 4 months ago
- SARs-CoV-2 Primer schemes☆16Updated 3 months ago
- Influenza data pipeline to automate genotyping assignment☆37Updated 2 months ago
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆35Updated this week
- Follow up to Grace Blackwell's 661k dataset, for 2023☆115Updated last week
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆38Updated 2 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆36Updated last week
- Bioinformatics Pipeline and Visualization resources☆57Updated last year
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆46Updated last week
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆55Updated this week
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆49Updated 3 weeks ago
- Bifrost graph gene caller.☆96Updated 11 months ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆37Updated 3 weeks ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆57Updated 3 weeks ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated last year
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 4 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 9 months ago
- Influenza genome analysis Nextflow workflow☆22Updated last month
- Discover and annotate the virome☆49Updated this week
- Unified Human Gut Virome Catalog☆35Updated last year
- A listing of software, tools and databases useful for virome analysis☆41Updated this week
- ☆36Updated 4 months ago
- Recombination-free trees☆59Updated 5 months ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- Split k-mer analysis – version 2☆88Updated last month
- Reference-guided multiple sequence alignment of viral genomes☆71Updated 2 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 5 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 8 months ago
- Strain resolver for metagenomics☆79Updated last year