Alternatives and similar repositories for lineage-designation

Users that are interested in lineage-designation are comparing it to the libraries listed below

• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆39Updated last week
• theosanderson / chronumental
  Estimating time trees from very large phylogenies
  ☆27Updated last year
• corneliusroemer / pango_aliasor
  Utility to alias and dealias pango lineages
  ☆23Updated last year
• mikemc / metacal
  Metagenomics calibration R package
  ☆20Updated 3 years ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆25Updated 3 weeks ago
• PoonLab / covizu
  Rapid analysis and visualization of coronavirus genome variation
  ☆48Updated last week
• duchene / phylomad
  ☆19Updated last year
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆63Updated last year
• andersgs / harrietr
  An `R` package for various phylogenetic and evolutionary biology data manipulations
  ☆12Updated 7 years ago
• dorbarker / voc-identify
  Identify Variants of Concern from metagenomic samples of SARS-CoV-2
  ☆12Updated 4 years ago
• nextstrain / zika-tutorial
  Data and scripts for Zika virus tutorial
  ☆10Updated 9 months ago
• artic-network / civet
  Cluster Investigation & Virus Epidemiology Tool
  ☆50Updated 3 months ago
• danlwarren / RWTY
  R We There Yet?
  ☆31Updated 6 months ago
• KThorellGroup / BACTpipe
  BACTpipe: An assembly and annotation pipeline for bacterial genomics
  ☆20Updated 9 months ago
• cambiotraining / sars-cov-2-genomics
  Course materials for an introduction to SARS-CoV-2 sequencing data analysis
  ☆14Updated last year
• quick-lab / SARS-CoV-2
  SARs-CoV-2 Primer schemes
  ☆16Updated 4 months ago
• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆22Updated last week
• mrc-ide / skygrowth
  Phylodynamic inference
  ☆18Updated 5 years ago
• tgvaughan / bacter
  Bacterial phylogenetics in BEAST 2.
  ☆18Updated 2 years ago
• enasequence / ena-bulk-webincli
  Validate and submit reads using Webin-CLI in batch.
  ☆11Updated 2 years ago
• onecodex / sars-cov-2
  SARS-CoV-2 variant calling and consensus assembly pipeline
  ☆25Updated 2 years ago
• Wytamma / beastiary
  Real time and remote MCMC trace monitoring with BEASTIARY.
  ☆20Updated 4 months ago
• emvolz-phylodynamics / treestructure
  ☆18Updated this week
• CDCgov / tostadas
  🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
  ☆28Updated this week
• theosanderson / Codon2Nucleotide
  ☆12Updated 2 years ago
• tothuhien / lsd-0.3beta
  ☆12Updated 6 years ago
• thednainus / Bayesian_tutorial
  Tutorial on Bayesian phylogenetic analysis
  ☆47Updated 8 years ago
• tseemann / seeka
  Get microbial sequence data easier and faster
  ☆28Updated 5 years ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆39Updated 5 months ago
• abschneider / StrainHub
  Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
  ☆17Updated 3 years ago