Official place for proposals and details around monkeypox virus lineage designations
☆23Dec 9, 2025Updated 5 months ago
Alternatives and similar repositories for lineage-designation
Users that are interested in lineage-designation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextstrain build for mpox virus☆50Updated this week
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- ☆22Feb 12, 2026Updated 3 months ago
- Data and scripts for Zika virus tutorial☆10Oct 14, 2025Updated 7 months ago
- ☆23Apr 2, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Feb 15, 2023Updated 3 years ago
- Nextstrain build for avian influenza viruses☆28Apr 20, 2026Updated last month
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 3 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- ☆22Apr 28, 2026Updated last month
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆42Feb 26, 2026Updated 3 months ago
- viral-ngs: complete pipelines☆73Updated this week
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆14May 28, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A tool for exploring large trees in the browser☆132May 7, 2026Updated 3 weeks ago
- Consensus sequences for each Pango lineage☆23Jun 27, 2025Updated 11 months ago
- ☆51Mar 11, 2022Updated 4 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- A message queue for genomic surveillance☆20Oct 14, 2021Updated 4 years ago
- ☆16Oct 29, 2025Updated 7 months ago
- Datasets for https://github.com/nextstrain/nextclade☆45May 22, 2026Updated last week
- ☆32Aug 28, 2025Updated 9 months ago
- VIGOR4☆22Aug 15, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Apr 24, 2023Updated 3 years ago
- Repository to propose and discuss lineages☆51May 13, 2026Updated 2 weeks ago
- Programmatically interact with the GISAID database.☆82Aug 5, 2025Updated 9 months ago
- ☆44Feb 13, 2026Updated 3 months ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13May 5, 2026Updated 3 weeks ago
- Ultrafast Sample Placement on Existing Trees☆140May 21, 2026Updated last week
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10May 15, 2026Updated 2 weeks ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆25Jun 25, 2024Updated last year
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated this week
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- Nextstrain build for dengue virus☆14Apr 20, 2026Updated last month
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Mar 17, 2026Updated 2 months ago
- ☆11Aug 18, 2024Updated last year
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆14May 18, 2026Updated last week