mpxv-lineages / lineage-designationLinks
Official place for proposals and details around monkeypox virus lineage designations
☆23Updated last month
Alternatives and similar repositories for lineage-designation
Users that are interested in lineage-designation are comparing it to the libraries listed below
Sorting:
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated last week
- Estimating time trees from very large phylogenies☆28Updated last year
- Utility to alias and dealias pango lineages☆23Updated last year
- Scalable relaxed clock phylogenetic dating☆26Updated last month
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆35Updated 2 weeks ago
- An easy way of MLSTyping your genomes in R.☆18Updated 4 years ago
- ☆18Updated 6 months ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Updated 3 weeks ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Identify Variants of Concern from metagenomic samples of SARS-CoV-2☆12Updated 4 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 6 years ago
- Finding prophage regions in bacterial genomes using brute force☆21Updated 2 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 4 months ago
- Bacterial phylogenetics in BEAST 2.☆18Updated 2 years ago
- Reconstruction of transmission trees using genomic data☆63Updated 2 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 10 months ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Updated 3 years ago
- A functional profiler for metagenomes using FracMinHash☆17Updated 3 months ago
- Create your own PanViz visualizations☆20Updated 7 years ago
- ☆20Updated 6 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 3 weeks ago
- map Illumina metagenomes to genomes!☆38Updated last month
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆21Updated 5 months ago
- Working with the outputs of sourmash in R☆27Updated last year
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last month
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆14Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Interpretative standards for AMR genotypes☆25Updated last month
- D3 based visualisation for comparative genomics☆14Updated 9 years ago