mpxv-lineages / lineage-designationLinks
Official place for proposals and details around monkeypox virus lineage designations
☆23Updated 2 months ago
Alternatives and similar repositories for lineage-designation
Users that are interested in lineage-designation are comparing it to the libraries listed below
Sorting:
- Estimating time trees from very large phylogenies☆28Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated last month
- Utility to alias and dealias pango lineages☆23Updated last year
- Scalable relaxed clock phylogenetic dating☆27Updated 2 months ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last month
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 4 months ago
- Bacterial phylogenetics in BEAST 2.☆18Updated 2 years ago
- Identify Variants of Concern from metagenomic samples of SARS-CoV-2☆12Updated 4 years ago
- Reconstruction of transmission trees using genomic data☆63Updated 2 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 11 months ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Updated last month
- ☆19Updated 7 months ago
- Validate and submit reads using Webin-CLI in batch.☆11Updated 2 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- ☆74Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Create your own PanViz visualizations☆20Updated 7 years ago
- Finding prophage regions in bacterial genomes using brute force☆21Updated 2 years ago
- ☆20Updated 7 months ago
- Metagenomics calibration R package☆20Updated 3 years ago
- An easy way of MLSTyping your genomes in R.☆18Updated 4 years ago
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆17Updated 3 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated last month
- A set of scripts for calculating pairwise SNP distance☆43Updated 2 years ago
- Fungal Genome Mapping Pipeline☆18Updated 6 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated last year
- Read contamination removal☆25Updated last year
- Data and scripts for Zika virus tutorial☆10Updated 3 weeks ago
- Influenza genome analysis Nextflow workflow☆23Updated last month
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 6 years ago