☆75Jan 23, 2024Updated 2 years ago
Alternatives and similar repositories for variant_definitions
Users that are interested in variant_definitions are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 9 months ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 3 years ago
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 3 years ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 6 months ago
- snipit: summarise snps relative to your reference sequence☆178Jan 13, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆60Mar 23, 2023Updated 3 years ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Ultrafast Sample Placement on Existing Trees☆140Jun 1, 2026Updated last month
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 4 months ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 3 weeks ago
- Add biological annotations to variants in a given VCF file.☆33Apr 4, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆45Feb 13, 2026Updated 4 months ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 4 years ago
- rapidly rid reads of horrid humans☆15Dec 2, 2021Updated 4 years ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- ☆51Mar 11, 2022Updated 4 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Jun 17, 2025Updated last year
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 4 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes☆28Dec 9, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆171Mar 22, 2023Updated 3 years ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49May 14, 2026Updated last month
- ☆38Jan 12, 2026Updated 5 months ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Jun 14, 2022Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 8 years ago
- Repo for PrimerSchemes☆17Updated this week
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Updated this week
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆54Jul 24, 2025Updated 11 months ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆115Jun 18, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Depth-weighted De-Mixing☆134Updated this week
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- Assembly of Nanopore Sequencing☆17May 21, 2026Updated last month
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆259May 26, 2026Updated last month
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- UPHL's Reference Free Pipeline☆29Updated this week
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago