ukhsa-collaboration / variant_definitionsLinks
☆74Updated last year
Alternatives and similar repositories for variant_definitions
Users that are interested in variant_definitions are comparing it to the libraries listed below
Sorting:
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 2 months ago
- Reconstruction of transmission trees using genomic data☆63Updated last year
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆31Updated 2 months ago
- Global phylogenies of SARS-CoV-2 sequences☆86Updated last year
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆56Updated 2 years ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., in prep.)☆34Updated this week
- Programmatically interact with the GISAID database.☆78Updated 3 weeks ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated 11 months ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆48Updated last year
- ☆49Updated 3 years ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Updated this week
- resources for bioinformatics education☆86Updated 3 months ago
- Bioinformatics Pipeline and Visualization resources☆57Updated last year
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆36Updated this week
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated 3 weeks ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆49Updated 3 years ago
- Depth-weighted De-Mixing☆119Updated this week
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆37Updated 3 weeks ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆48Updated 3 years ago
- Munge GenBank files into FASTA and tab-separated metadata☆14Updated last year
- Ultrafast Sample Placement on Existing Trees☆133Updated last month
- Primer schemes for real-time genome epidemiology☆29Updated 2 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- Reference-based consensus creation☆56Updated last week
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆59Updated 5 months ago
- ☆19Updated 3 weeks ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- Process consensus file for COG-UK data☆14Updated 3 years ago