cole-trapnell-lab / Scribe
Regulatory networks with Direct Information
☆16Updated 5 years ago
Alternatives and similar repositories for Scribe:
Users that are interested in Scribe are comparing it to the libraries listed below
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- ☆35Updated last week
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 4 years ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- RNA velocity validation☆23Updated 2 years ago
- Information-based dimensionality reduction☆29Updated 2 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 5 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- ☆28Updated 6 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated last week
- Individual level Differential Expression Analysis for Single cells☆23Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated 11 months ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆21Updated 6 months ago
- Parse ArchR arrow files to anndata h5ad☆13Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago