Regulatory networks with Direct Information
☆19Oct 14, 2019Updated 7 years ago
Alternatives and similar repositories for Scribe
Users that are interested in Scribe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆19Jun 25, 2020Updated 6 years ago
- Tools for building and manipulating graphs in Python☆46Dec 18, 2025Updated 10 months ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆20Jun 13, 2024Updated 2 years ago
- CALISTA: Clustering And Lineage Inference in Single Cell Transcriptional Analysis☆10May 16, 2019Updated 7 years ago
- Regulatory networks with Direct Information in python☆42Mar 9, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- analysis pipeline for CODEC data☆13Apr 22, 2026Updated 6 months ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆20Aug 12, 2025Updated last year
- BioTIP: Biological Tipping-Point Identification and Characterization☆25Oct 20, 2025Updated last year
- ☆12Oct 31, 2020Updated 6 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 8 years ago
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- A canonical correlation analysis based method for discovering (quantitative) trait-specific heterogeneous regulatory networks.☆32May 8, 2026Updated 5 months ago
- Semi-parametric approach for the inference of gene regulatory networks from time series of expression data☆29Jun 23, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- singleCellNet in Python☆19Aug 6, 2026Updated 2 months ago
- R package for tissue-specific gene enrichment☆16Mar 10, 2022Updated 4 years ago
- pipeline for demultiplex and align both ATAC and RNA data generated in SHARE-seq☆16Jun 20, 2022Updated 4 years ago
- ☆38Dec 3, 2017Updated 8 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 9 years ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆26May 18, 2021Updated 5 years ago
- A software package for analyzing snapshots of developmental processes☆166Sep 15, 2022Updated 4 years ago
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 3 years ago
- repository containing analysis scripts and auxiliary files☆40Apr 9, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 6, 2026Updated 3 months ago
- Causal Deconvolution of Networks by Algorithmic Generative Models☆30May 9, 2019Updated 7 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆42Apr 15, 2021Updated 5 years ago
- Hidden Markov Optimal Transport: learning the sequence of latent cell-states and transitions in transcriptomic time-series.☆10Aug 24, 2025Updated last year
- Universal Neural Optimal Transport☆13Jul 29, 2025Updated last year
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago
- K-mer counting algorithms and count-data utilities for the BioJulia framework☆11Apr 23, 2023Updated 3 years ago
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated 2 years ago
- code for our EMNLP2020 paper: Multilevel Text Alignment with Cross-Document Attention by Xuhui Zhou, Nikolaos Pappas, and Noah A. Smith☆14May 18, 2021Updated 5 years ago
- 📝 [Tutorial] RepSeq data mining basics in R☆10Mar 13, 2019Updated 7 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆62Nov 18, 2022Updated 3 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆100Nov 30, 2023Updated 2 years ago
- List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures☆19Aug 28, 2020Updated 6 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Nov 7, 2016Updated 9 years ago