Regulatory networks with Direct Information
☆17Oct 14, 2019Updated 6 years ago
Alternatives and similar repositories for Scribe
Users that are interested in Scribe are comparing it to the libraries listed below
Sorting:
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆19Jun 25, 2020Updated 5 years ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Jun 13, 2024Updated last year
- Pathway-based trajectory inference method for time-series scRNAseq data☆25May 18, 2021Updated 4 years ago
- R package for tissue-specific gene enrichment☆15Mar 10, 2022Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Mar 9, 2023Updated 2 years ago
- 📝 [Tutorial] RepSeq data mining basics in R☆11Mar 13, 2019Updated 6 years ago
- ActiveDriverDB☆12May 1, 2023Updated 2 years ago
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 3 years ago
- ☆12Dec 7, 2020Updated 5 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Mar 26, 2022Updated 3 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- singleCellNet in Python☆15Updated this week
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 7 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆59Nov 18, 2022Updated 3 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆16Feb 25, 2019Updated 7 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Nov 27, 2024Updated last year
- pipeline for demultiplex and align both ATAC and RNA data generated in SHARE-seq☆16Jun 20, 2022Updated 3 years ago
- ☆13Feb 16, 2019Updated 7 years ago
- Tools for building and manipulating graphs in Python☆46Dec 18, 2025Updated 2 months ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- Dynamic inference from single-cell snapshots by optimal transport☆20Mar 14, 2024Updated last year
- ☆19Sep 20, 2021Updated 4 years ago
- python API to the CoGAPS NMF package☆19May 19, 2025Updated 9 months ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆35May 14, 2020Updated 5 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- A software package for analyzing snapshots of developmental processes☆156Sep 15, 2022Updated 3 years ago
- CELLEX (CELL-type EXpression-specificity)☆44Jun 2, 2023Updated 2 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆39Aug 23, 2023Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Jun 10, 2021Updated 4 years ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 6 months ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Apr 24, 2020Updated 5 years ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆23Oct 20, 2025Updated 4 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Jun 9, 2022Updated 3 years ago
- Population balance analysis☆44Apr 25, 2019Updated 6 years ago
- The software of Pamona, a partial manifold alignment algorithm.☆21Mar 21, 2021Updated 4 years ago
- List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures☆18Aug 28, 2020Updated 5 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated last year