Alternatives and similar repositories for Pamona

Users that are interested in Pamona are comparing it to the libraries listed below

• caokai1073 / UnionCom

  View on GitHub
  The Software of UnionCom Algorithm
  ☆25Jul 29, 2024Updated last year
• ratschlab / scim

  View on GitHub
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆22Jun 7, 2021Updated 4 years ago
• theislab / multigrate

  View on GitHub
  Multigrate: multiomic data integration for single-cell genomics
  ☆30Feb 9, 2026Updated last week
• rsinghlab / SCOT

  View on GitHub
  Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data
  ☆78Jan 25, 2024Updated 2 years ago
• PeterZZQ / scMoMaT

  View on GitHub
  ☆21Jun 17, 2024Updated last year
• morisUtokyo / uTR

  View on GitHub
  Detect key Units in mosaic Tandem Repeats from representative reads from the same locus
  ☆11Aug 2, 2023Updated 2 years ago
• KChen-lab / bindSC

  View on GitHub
  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…
  ☆39Aug 23, 2023Updated 2 years ago
• zhongzhd / ont_m6a_detection

  View on GitHub
  ☆10Mar 11, 2025Updated 11 months ago
• raphael-group / paste_reproducibility

  View on GitHub
  ☆14Jan 25, 2023Updated 3 years ago
• saezlab / ocean

  View on GitHub
  R package for metabolic enzyme enrichment anaylsis
  ☆13Oct 24, 2025Updated 3 months ago
• mqzhanglab / BSDE

  View on GitHub
  A single-cell RNAseq differential expression analysis approach in case-control study
  ☆10Mar 6, 2022Updated 3 years ago
• cyang235 / smooth-seq

  View on GitHub
  A pipeline for Smooth-seq data analysis.
  ☆10Sep 23, 2021Updated 4 years ago
• SunXQlab / ESICCC

  View on GitHub
  ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods
  ☆12Jan 10, 2024Updated 2 years ago
• KHP-Informatics / DNAscanv2

  View on GitHub
  DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…
  ☆14May 7, 2024Updated last year
• sciai-lab / BranchedOT

  View on GitHub
  ☆13Jul 17, 2023Updated 2 years ago
• rpmccordlab / SMILE

  View on GitHub
  SMILE: Mutual Information Learning for Integration of Single Cell Omics Data
  ☆11Mar 28, 2023Updated 2 years ago
• buenrostrolab / dscATAC_analysis_code

  View on GitHub
  Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
  ☆11Sep 30, 2019Updated 6 years ago
• kakarotcq / Con-AAE

  View on GitHub
  ☆12Apr 3, 2023Updated 2 years ago
• AlexandrovLab / EnsembleVariantCallingPipeline

  View on GitHub
  The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…
  ☆14Jul 24, 2025Updated 6 months ago
• xianglin226 / scMDC

  View on GitHub
  Single Cell Multi-omics deep clustering
  ☆29Jul 1, 2025Updated 7 months ago
• dpeerlab / seqc

  View on GitHub
  Single-Cell Sequencing Quality Control and Processing Software
  ☆16Mar 26, 2022Updated 3 years ago
• sysbio-curie / transmorph

  View on GitHub
  Computational framework for dataset integration
  ☆11Jul 21, 2023Updated 2 years ago
• MarioniLab / sarlacc

  View on GitHub
  The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…
  ☆15Feb 27, 2019Updated 6 years ago
• chenhcs / GIANT

  View on GitHub
  GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.
  ☆14Jun 13, 2023Updated 2 years ago
• fmfi-compbio / warpstr

  View on GitHub
  Determining tandem repeat lengths using raw nanopore signals.
  ☆15Sep 11, 2023Updated 2 years ago
• Acribbs / TallyNN

  View on GitHub
  single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)
  ☆13Jul 13, 2023Updated 2 years ago
• Gregor-Mendel-Institute / bookend

  View on GitHub
  End-guided RNA assembler
  ☆15Dec 2, 2025Updated 2 months ago
• veltenlab / mitoClone

  View on GitHub
  ☆12Apr 16, 2021Updated 4 years ago
• chriscainx / gastric-cancer

  View on GitHub
  ☆16Mar 2, 2023Updated 2 years ago
• marrlab / CAR_T_TargetIdentification

  View on GitHub
  Computational identification of targets for CAR-T cell therapy in AML
  ☆21Dec 25, 2022Updated 3 years ago
• cole-trapnell-lab / Scribe

  View on GitHub
  Regulatory networks with Direct Information
  ☆17Oct 14, 2019Updated 6 years ago
• mccoy-lab / t2t-variants

  View on GitHub
  Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".
  ☆17Jan 17, 2023Updated 3 years ago
• broadchenf / Slideseq

  View on GitHub
  ☆11Feb 18, 2019Updated 6 years ago
• quon-titative-biology / scAlign

  View on GitHub
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆38Nov 16, 2021Updated 4 years ago
• timplab / nanoNOMe

  View on GitHub
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆20Nov 18, 2022Updated 3 years ago
• SchulzLab / STARE

  View on GitHub
  TF analysis from epigenetic and Hi-C data
  ☆19Apr 1, 2025Updated 10 months ago
• aristoteleo / dynast-release

  View on GitHub
  Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
  ☆19Aug 12, 2025Updated 6 months ago
• wdingx / pan-genome-visualization

  View on GitHub
  ☆15Jan 10, 2023Updated 3 years ago
• ELELAB / MoonlightR

  View on GitHub
  ☆17May 15, 2024Updated last year