Alternatives and similar repositories for Pamona

Users that are interested in Pamona are comparing it to the libraries listed below

• zcang / SpaOTsc
  ☆45Updated 2 years ago
• ChengF-Lab / autoCell
  ☆16Updated 3 years ago
• YosefLab / totalVI_reproducibility
  ☆16Updated 2 years ago
• PeterZZQ / scMoMaT
  ☆21Updated last year
• YosefLab / SymSim
  ☆26Updated 9 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆36Updated 11 months ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆58Updated last year
• Spencerfar / LatentVelo
  ☆24Updated last year
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 4 years ago
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆24Updated 8 months ago
• zsteve / gWOT
  Global Waddington-OT
  ☆23Updated 3 months ago
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆63Updated last year
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• zhanglhbioinfor / DIRECT-NET
  ☆11Updated 2 years ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆42Updated last year
• AllonKleinLab / cospar
  ☆26Updated last year
• cliffzhou92 / MuTrans-release
  ☆15Updated 3 years ago
• YosefLab / velovi
  ☆40Updated this week
• SunXQlab / ESICCC
  ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods
  ☆12Updated last year
• raphael-group / paste_reproducibility
  ☆12Updated 2 years ago
• yutongo / TIGON
  ☆43Updated 3 months ago
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆25Updated 2 years ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• rsinghlab / SCOT
  Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data
  ☆72Updated last year
• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆26Updated 7 months ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated last year
• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆27Updated 3 years ago
• raphael-group / DeST_OT
  Developmental Spatiotemporal Optimal Transport
  ☆11Updated 3 months ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆35Updated last year