Tuteja-Lab / TissueEnrich
R package for tissue-specific gene enrichment
☆12Updated 2 years ago
Alternatives and similar repositories for TissueEnrich:
Users that are interested in TissueEnrich are comparing it to the libraries listed below
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆11Updated last year
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- Network analysis for multi-omics☆13Updated 2 weeks ago
- ☆13Updated 7 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 3 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 4 years ago
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆16Updated 2 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆23Updated 6 months ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆24Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆16Updated last year
- ☆11Updated 6 years ago
- ☆17Updated 3 years ago
- ☆18Updated 10 months ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- Create Regional Association Plots☆11Updated 5 months ago
- ☆20Updated last year
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated last year
- Functional Annotation for Single-Cell Transcriptomics☆10Updated 6 months ago
- ☆9Updated 7 years ago
- A record of the analysis pipelines used to create the HTAPP data☆31Updated last month
- Pseudotime Analysis for Bulk Data☆14Updated 5 months ago
- Dichotomous of innate immune landscape☆17Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago