Tuteja-Lab / TissueEnrichLinks
R package for tissue-specific gene enrichment
☆14Updated 3 years ago
Alternatives and similar repositories for TissueEnrich
Users that are interested in TissueEnrich are comparing it to the libraries listed below
Sorting:
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆17Updated 2 years ago
- Pan cancer summary statistics from meta analyses of UK Biobank and Kaiser GERA cohorts.☆16Updated 5 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Updated 2 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 4 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆20Updated 3 years ago
- ☆18Updated 7 years ago
- The source code of web server TIP, including example data.☆19Updated 6 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- cEll tyPe enrIChment☆15Updated 2 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated 6 months ago
- R package☆21Updated last year
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- sharing interactive single cell gene expression visualizations from Seurat☆10Updated 2 years ago
- This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes…☆13Updated 3 years ago
- An R package for visualising cell-cell interactions☆43Updated last year
- ☆12Updated 5 years ago
- Analysis and visualization of RNA-Seq results☆30Updated last month
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆14Updated 2 years ago
- ☆12Updated 6 years ago
- ☆17Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆15Updated 3 years ago
- We design a method for heritability estimation, namely LD Eigenvalue Regression (LDER), which extends the LDSC method and provides more a…☆13Updated 2 months ago