ccshao / nimfa
nimfa - A Python Library for Nonnegative Matrix Factorization Techniques
☆10Updated 6 years ago
Alternatives and similar repositories for nimfa:
Users that are interested in nimfa are comparing it to the libraries listed below
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago
- ☆16Updated 6 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 5 months ago
- ☆28Updated 2 years ago
- ☆15Updated 8 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆36Updated 6 years ago
- ☆21Updated 6 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆13Updated 3 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆13Updated 5 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Notebook and examples related to La Manno and Gyllborg et al. 2016☆16Updated 8 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆37Updated 3 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆21Updated 7 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Identify circular trajectories in scRNA-seq data using an autoencoder with sinusoidal activations☆22Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆42Updated 8 months ago
- ☆37Updated 8 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- SPATA Package for spatial gene expression analysis☆22Updated 2 years ago
- ☆18Updated 7 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago