pipeline for demultiplex and align both ATAC and RNA data generated in SHARE-seq
☆16Jun 20, 2022Updated 4 years ago
Alternatives and similar repositories for SHARE-seq-alignment
Users that are interested in SHARE-seq-alignment are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Jan 20, 2021Updated 5 years ago
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated 2 years ago
- ☆11May 6, 2021Updated 5 years ago
- Regulatory networks with Direct Information☆19Oct 14, 2019Updated 6 years ago
- Inferring CNV data from single cell ATAC seq☆28Jun 24, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for demultiplexing and aligning both ATAC and RNA data generated in SHARE-seqV2☆18Apr 21, 2023Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Jan 30, 2026Updated 7 months ago
- Granular Functional Filtering (Gruffi) to isolate stressed cells☆14Nov 7, 2024Updated last year
- Learning notes for DBiT-Notes☆12Nov 28, 2024Updated last year
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- 2D Vector-Quantized Auto-Encoder for compression of Whole-Slide Images in Histopathology☆16Jul 18, 2024Updated 2 years ago
- A list of positions (mostly biology-related) open to apply☆41Updated this week
- ☆32Apr 9, 2022Updated 4 years ago
- Python package designed for single-cell calling cards data☆16Jun 8, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Aug 9, 2022Updated 4 years ago
- my notes for scATACseq analysis☆135Apr 24, 2024Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆199Aug 24, 2026Updated 3 weeks ago
- R functions underlying ExpressAnalyst☆14Updated this week
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- ☆15Aug 5, 2022Updated 4 years ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 7 months ago
- ☆12Apr 21, 2023Updated 3 years ago
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆15Updated this week
- Functional Inference of Gene Regulation☆55Jul 5, 2024Updated 2 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Supervised Vector-Quantized Autoencoder☆20Jul 6, 2021Updated 5 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- Reproducible Snakemake workflow for benchmarking single-cell chromatin accessibility analysis methods, published in https://doi.org/10.11…☆17Jan 24, 2026Updated 7 months ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago
- Quantitative Fate Mapping: reconstructs the hierarchy and dynamics of progenitor states from retrospective lineage barcodes. Cell, 2022.☆10Oct 15, 2025Updated 11 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆12Oct 23, 2023Updated 2 years ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆13Dec 7, 2021Updated 4 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 8 years ago
- .h5mu files interface for Seurat☆35Nov 28, 2023Updated 2 years ago
- stageR package☆13May 8, 2026Updated 4 months ago
- ☆12May 30, 2023Updated 3 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year