pipeline for demultiplex and align both ATAC and RNA data generated in SHARE-seq
☆16Jun 20, 2022Updated 4 years ago
Alternatives and similar repositories for SHARE-seq-alignment
Users that are interested in SHARE-seq-alignment are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Jan 20, 2021Updated 5 years ago
- Pipeline for demultiplexing and aligning both ATAC and RNA data generated in SHARE-seqV2☆17Apr 21, 2023Updated 3 years ago
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated 2 years ago
- ☆11May 6, 2021Updated 5 years ago
- Regulatory networks with Direct Information☆19Oct 14, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Inferring CNV data from single cell ATAC seq☆28Jun 24, 2025Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 5 months ago
- Learning notes for DBiT-Notes☆11Nov 28, 2024Updated last year
- Granular Functional Filtering (Gruffi) to isolate stressed cells☆14Nov 7, 2024Updated last year
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- 2D Vector-Quantized Auto-Encoder for compression of Whole-Slide Images in Histopathology☆16Jul 18, 2024Updated 2 years ago
- A list of positions (mostly biology-related) open to apply☆40Updated this week
- ☆13Aug 9, 2022Updated 3 years ago
- Python package designed for single-cell calling cards data☆16Jun 8, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- my notes for scATACseq analysis☆133Apr 24, 2024Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆192Mar 27, 2025Updated last year
- R functions underlying ExpressAnalyst☆14Updated this week
- ☆15Aug 5, 2022Updated 3 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 5 months ago
- ☆12Apr 21, 2023Updated 3 years ago
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- ☆15Jul 2, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Functional Inference of Gene Regulation☆54Jul 5, 2024Updated 2 years ago
- Multimodal Data (.h5mu) implementation for Python☆127Updated this week
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- Supervised Vector-Quantized Autoencoder☆20Jul 6, 2021Updated 5 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- ☆15Sep 27, 2022Updated 3 years ago
- Reproducible Snakemake workflow for benchmarking single-cell chromatin accessibility analysis methods, published in https://doi.org/10.11…☆17Jan 24, 2026Updated 5 months ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago
- ☆27Mar 31, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Oct 15, 2025Updated 9 months ago
- ☆12Oct 23, 2023Updated 2 years ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆13Dec 7, 2021Updated 4 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 7 years ago
- .h5mu files interface for Seurat☆34Nov 28, 2023Updated 2 years ago
- stageR package☆13May 8, 2026Updated 2 months ago
- ☆12May 30, 2023Updated 3 years ago