Alternatives and similar repositories for SHARE-seq-alignment

Users that are interested in SHARE-seq-alignment are comparing it to the libraries listed below

• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆111Updated 11 months ago
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆112Updated last year
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆74Updated 8 months ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆133Updated 8 months ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 3 years ago
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆61Updated last month
• navinlabcode / CellTrek
  ☆125Updated 3 years ago
• almaan / stereoscope
  Spatial mapping of cell types by integration of transcriptomics data
  ☆95Updated 3 years ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆76Updated last month
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆105Updated last year
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆113Updated last year
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆122Updated last week
• kharchenkolab / scITD
  Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
  ☆61Updated last year
• theislab / spatial_scog_workshop_2022
  Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022
  ☆53Updated 3 years ago
• snehamitra / SCARlink
  ☆59Updated 3 months ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆69Updated last year
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆104Updated last year
• SydneyBioX / scJoint
  ☆60Updated 2 years ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆111Updated 6 months ago
• data2intelligence / CytoSig
  ☆58Updated last year
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆56Updated 2 years ago
• YMa-lab / CARD
  ☆125Updated last year
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆65Updated 2 weeks ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆77Updated 8 months ago
• YosefLab / Hotspot
  ☆127Updated 6 months ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆81Updated 2 years ago
• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆26Updated 11 months ago
• GreenleafLab / MPAL-Single-Cell-2019
  Publication Page for MPAL Paper 2019
  ☆83Updated 5 years ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆65Updated last year
• rajewsky-lab / novosparc
  ☆131Updated last year