perslab / CELLEXLinks
CELLEX (CELL-type EXpression-specificity)
☆43Updated 2 years ago
Alternatives and similar repositories for CELLEX
Users that are interested in CELLEX are comparing it to the libraries listed below
Sorting:
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated 6 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 4 months ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆54Updated 2 years ago
- ☆38Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆34Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 10 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆42Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- ☆18Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- Ordering gene-expression and functional events in single-cell experiments☆23Updated last year
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated 2 years ago
- ☆50Updated 5 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- scWGCNA☆61Updated 2 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 4 months ago
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Updated 5 years ago
- ☆29Updated 3 weeks ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- scRNA-seq cell type identification☆43Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆49Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 7 months ago